View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_10 (Length: 491)
Name: NF14664_low_10
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 200 - 468
Target Start/End: Complemental strand, 13079349 - 13079081
Alignment:
| Q |
200 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagattgcaatgaagattaaagatcaacaatgtttgcaagaaaaagaggcaaatgatcatgaaat |
299 |
Q |
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| T |
13079349 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagagtgcaatgaagattaaagatcaacaatgtttgcaagaaaaagaggcaaatgatcatgaaat |
13079250 |
T |
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| Q |
300 |
agagaaagcaaagaaggtgaaaggacaagaggcaaaaagaaagagtgatgaattcatttttggcgagtctacaacaaaggaagaacctcaagtacaaaag |
399 |
Q |
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| T |
13079249 |
agagaaagcaaagaaggtgaaaggacaagaggcaaaaagaaagagtgatgaatttatttttggcgagtctacaacaaaggaagaacctcaagtacaaaag |
13079150 |
T |
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| Q |
400 |
gcaaaagatccaaaaggaatagacacaagaacgtctgaacgagaattgcaatgtgaaagaggccctgct |
468 |
Q |
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| T |
13079149 |
gcaaaagatccaaaaggaatagacacaagaacgtctgaacgagaattgcaatgtgaaagaggccctgct |
13079081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 200 - 465
Target Start/End: Complemental strand, 13075145 - 13074880
Alignment:
| Q |
200 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagattgcaatgaagattaaagatcaacaatgtttgcaagaaaaagaggcaaatgatcatgaaat |
299 |
Q |
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| T |
13075145 |
ttgtaccatttgtgaagggagaaatttaagaacctaagatttcaatgaagattaaagatcaacaatgtttgcaagaaaatgagtcaaatgatcatgaaat |
13075046 |
T |
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| Q |
300 |
agagaaagcaaagaaggtgaaaggacaagaggcaaaaagaaagagtgatgaattcatttttggcgagtctacaacaaaggaagaacctcaagtacaaaag |
399 |
Q |
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| T |
13075045 |
agagtaagcaaataaggtgaaaggataagaggcaaaaagaaattgtgatgaatttatttttggtgagtctacaacaaaggaagaacctcaagtacaaaag |
13074946 |
T |
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| Q |
400 |
gcaaaagatccaaaaggaatagacacaagaacgtctgaacgagaattgcaatgtgaaagaggccct |
465 |
Q |
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| T |
13074945 |
gcaaaagatttaaaaggaatagatacaagaacgtctgaacgagaattgcaatgtgaaagaggccct |
13074880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 13079548 - 13079408
Alignment:
| Q |
1 |
caaaatgaagtagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatagatcaaaagaagatt |
100 |
Q |
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| T |
13079548 |
caaaatgaagtagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatagatcaaaagaagatt |
13079449 |
T |
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| Q |
101 |
ttccaatgaaaatgttagactcacaaggtgatacaacagag |
141 |
Q |
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| T |
13079448 |
ttccaatgaaaatgttagactcacaaggtgatacaacagag |
13079408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 13075334 - 13075207
Alignment:
| Q |
11 |
tagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatagatcaaaagaagattttccaatgaa |
110 |
Q |
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| T |
13075334 |
tagatgaaggtttcaagaaaaacataacaaaggaaaaagatgattgttatttgcaagaaaagatgagtaaagatagatcaaaagaagattttccaatgaa |
13075235 |
T |
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| Q |
111 |
aatgttagactcacaaggtgatacaaca |
138 |
Q |
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| T |
13075234 |
aatgttagactcataaggtgatacaaca |
13075207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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