View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_11 (Length: 488)
Name: NF14664_low_11
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 34694303 - 34694757
Alignment:
| Q |
18 |
gttaatggataatatacaagtatgaagtgaaatcttgtaacaacaaaagatattaagcctcttgtagaagaggtgccaaatgaagattgagacgagtaaa |
117 |
Q |
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| T |
34694303 |
gttaatggataatatacaagtatgaagtgaaatcttgtaacaacaaaagatattaagcctcttgtagaagaggtgccaaatgaagattgagacgagcaaa |
34694402 |
T |
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| Q |
118 |
gctttgatcatgtttacatgttaaccttcatattgtaaaaactttatgtatatatttaatgtcataataagattattgaaatccgcgttatgtgtcacct |
217 |
Q |
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| T |
34694403 |
gctttgatcatgtttacatgttaaccttcatattgtaaaaactttatgtatatgtttaatgtcataataagattattgaaatccgcattatgtgtcacct |
34694502 |
T |
|
| Q |
218 |
tgagtttacaaaatcaattcgattattcacgataataattctgacaaattcatgcaatatcaatcatatttattnnnnnnnnnnngggaaattcaatttc |
317 |
Q |
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| T |
34694503 |
tgattttacaaaatcaatttgattattcacgataataattctgacaaattcatgcaatatcaatcatatttatt--aataaaaaagggaaattcaatttc |
34694600 |
T |
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| Q |
318 |
ctcaaactaaataataaaaggtaaatcacgtgtttgttttcttggatccaacgacccacatcaaaaggtcaaagcaaggaaacatacatgaaagtttgca |
417 |
Q |
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| T |
34694601 |
ctcaaactaaataataaaaggtaaatcacgtgtttgttttcttggacccaacgacccacaccaaaaggccaaagcaaggaaacatacatgaaagtttgca |
34694700 |
T |
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| Q |
418 |
catggaactcaattcaatatacaaattcggaaatgttgaggtttcacctacctatgc |
474 |
Q |
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| T |
34694701 |
catggaactcaattcaatatacaaattcggaaatgttgaggtttcacctacctatgc |
34694757 |
T |
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