View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14664_low_12 (Length: 485)
Name: NF14664_low_12
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 53480140 - 53479895
Alignment:
| Q |
20 |
aaccctccctccccataaaagtggtataaatagttactcgattttagaatggtaactgaaagagctctaaagagagtacatcagtaacacaaaataacag |
119 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
53480140 |
aaccctccctccccataaaagtggtttaaatagttactcaattttaaaatggtaactgaaagagctctaaagagagtacattagtaacacaaaatagaag |
53480041 |
T |
|
| Q |
120 |
cttcgagaaaaatgagacgagctcctgtggataaattgtgaaacttccgcatataaaatttccctaaaattctatcaatcacacggttaaaaattgacag |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53480040 |
cttcgagaaaaatgagacgagctcctgtggataaattgtgaaacttccgcatataaaatttccctaaaattctatcaatcacacggttaaaaattgacag |
53479941 |
T |
|
| Q |
220 |
cctacttggattatctccaattgacaaacacaaatacttaaatggg |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53479940 |
cctacttggattatctccaattgacaaacacaaatacttaaatggg |
53479895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 273 - 461
Target Start/End: Complemental strand, 53479775 - 53479587
Alignment:
| Q |
273 |
ctcttttcacatagcagcaacgtgtcatcagcaaactctaataggaaaattctaaacattactaatttgaaaatccttatacacctaaaatttgaggatg |
372 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53479775 |
ctcttttctcatagcagcaacgtgccatcagcaaactctaaaaggaaaattctaaacattactaatttgaaaatccttatacacctaaaatttgaggatg |
53479676 |
T |
|
| Q |
373 |
cacgaatcaaagaattaaatctttcaatggctaataaaaacaagatatatagaagacaaatgatctccttgccttaactcccaagcatt |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
53479675 |
cacgaatcaaagaattaaatctttcaatggctaataaaaacaagatatatagaagacaaatgatctccttgccttaactctcaagcatt |
53479587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University