View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_13 (Length: 480)
Name: NF14664_low_13
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 132 - 376
Target Start/End: Complemental strand, 28656335 - 28656097
Alignment:
| Q |
132 |
ggacatgcagggaaagtgcagtacctctatagtacaacaactaggatatacatatatggaacatatctagtgaggatgacatttttatgtgagaataaaa |
231 |
Q |
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| T |
28656335 |
ggacatgcagggaaagtgtagcacctcaataatacaac---taggatatacatctatggcacatagctagtgaggatgacatttttatgtgagaataaaa |
28656239 |
T |
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| Q |
232 |
ggaataattagtagtcattagattaaaatgtgtggatgaaattaaaaggttgattaagtaagtcctgagc-tatattctatcacgcacatgttttcttct |
330 |
Q |
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| T |
28656238 |
agaataattag-agtcataagattaaaatgtgtgaataaaattaaaaggttgattaagtgagtcctgaacttatatactttcacgcacatgttttcttct |
28656140 |
T |
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| Q |
331 |
cactcatcttcttcctcatgacccattgactcccaaacccccttca |
376 |
Q |
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| T |
28656139 |
cactcatcttct---tcttgacccatcgactcccaaacctccttca |
28656097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 379 - 460
Target Start/End: Complemental strand, 28656035 - 28655954
Alignment:
| Q |
379 |
tccctctgtgtccctattgatgtgaatctttcgtccgccttcaacccctcttgtcgtgaatctccctttcgccgacgtgaca |
460 |
Q |
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| T |
28656035 |
tccctctgcgtccctatcgatgtgaatctttcgtccgccttcaacccctcttgtcgtgaatatcccattcgccgacatgaca |
28655954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 28656503 - 28656464
Alignment:
| Q |
49 |
tgcttcatagatcacaacactcgctccctaataccactcc |
88 |
Q |
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| T |
28656503 |
tgcttcatagatcacaacactccctccctaataccactcc |
28656464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 8172915 - 8172829
Alignment:
| Q |
193 |
catatctagtgaggatgacatttttatgtgagaataaaaggaataattagtagtcattagattaaaatgtgtggatgaaattaaaag |
279 |
Q |
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| T |
8172915 |
catatcaagtgagaataacatatttatgtgagaatgataggaataaataacaaccgttagattaaaatgtgtggctgagattaaaag |
8172829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 279
Target Start/End: Complemental strand, 27007056 - 27006954
Alignment:
| Q |
177 |
atatacatatatggaacatatctagtgaggatgacatttttatgtgagaataaaaggaataattagtagtcattagattaaaatgtgtggatgaaattaa |
276 |
Q |
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| T |
27007056 |
atatatatatatggggcatatcaaatgagaataacatatttatgtgagaatgataggaataaataacaatcattagattaaaatgtatggctgagattaa |
27006957 |
T |
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| Q |
277 |
aag |
279 |
Q |
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| T |
27006956 |
aag |
27006954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 6115050 - 6114974
Alignment:
| Q |
183 |
atatatggaacatatctagtgaggatgacatttttatgtgagaataaaaggaataattagtagtcattagattaaaa |
259 |
Q |
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| T |
6115050 |
atatatggggcatatcaagtgagaataacatttatatgtgagaatggtaggaataaatagtaggcatcagattaaaa |
6114974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 29729599 - 29729683
Alignment:
| Q |
193 |
catatctagtgaggatgacatttttatgtgagaataaaaggaataattagtagtcattagattaaaatgtgtggatgaaattaaa |
277 |
Q |
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| T |
29729599 |
catatcaagtgagcataacatatttatgtgagaatgataggaataaataacaaccgttagattaaaatgtgtggttgagattaaa |
29729683 |
T |
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