View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14664_low_14 (Length: 477)
Name: NF14664_low_14
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 10873092 - 10873567
Alignment:
| Q |
1 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873092 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgca |
10873191 |
T |
|
| Q |
101 |
aatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873192 |
aatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaat |
10873291 |
T |
|
| Q |
201 |
tgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873292 |
tgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaa |
10873391 |
T |
|
| Q |
301 |
tcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaacc |
400 |
Q |
| |
|
|||||| || ||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873392 |
tcttacgactggggctcgggtcattccgtcacggaggacaacggcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaacc |
10873491 |
T |
|
| Q |
401 |
aaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10873492 |
aaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
10873567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 10878163 - 10878638
Alignment:
| Q |
1 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878163 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgca |
10878262 |
T |
|
| Q |
101 |
aatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878263 |
aatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaat |
10878362 |
T |
|
| Q |
201 |
tgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878363 |
tgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaa |
10878462 |
T |
|
| Q |
301 |
tcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaacc |
400 |
Q |
| |
|
|||||| || ||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878463 |
tcttacgactggggctcgggtcattccgtcacggaggacaacggcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaacc |
10878562 |
T |
|
| Q |
401 |
aaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10878563 |
aaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
10878638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 10883234 - 10883709
Alignment:
| Q |
1 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883234 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgca |
10883333 |
T |
|
| Q |
101 |
aatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883334 |
aatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaat |
10883433 |
T |
|
| Q |
201 |
tgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883434 |
tgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaa |
10883533 |
T |
|
| Q |
301 |
tcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaacc |
400 |
Q |
| |
|
|||||| || ||||||| |||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883534 |
tcttacgactggggctcgggtcattccgtcacggaggacaacggcggaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaacc |
10883633 |
T |
|
| Q |
401 |
aaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883634 |
aaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
10883709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 10867220 - 10866738
Alignment:
| Q |
1 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
10867220 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtacaaattctttcctgccatagtagctttaatactctgtaatcttgca |
10867121 |
T |
|
| Q |
101 |
aatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatga---gtaatttcaacaaa----atttatagtgaaacagaagaaagt |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||| ||||||| |||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
10867120 |
aatctacttgacctaaataaatatcgcagagaaaatcaaacaattattcaaatgactagtaatttcaacaaataaaatttaaagtgaaacagaagaaagt |
10867021 |
T |
|
| Q |
194 |
tcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcgg |
293 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
10867020 |
tcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgggaagctcttttggcag |
10866921 |
T |
|
| Q |
294 |
agttgaatcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccaccggaaacataaatagctttacagcctctattggtgct |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866920 |
agttgaatcttacaacgggggctctggtcattccgtcgcggagcacaaccgcggaagccccaccggaaacataaatagctttacagcctctattggtgct |
10866821 |
T |
|
| Q |
394 |
tgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10866820 |
tgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
10866738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 10887149 - 10887627
Alignment:
| Q |
1 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
10887149 |
cgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtataaattctttcctgccatagtagctttaatactctgtaatcttgca |
10887248 |
T |
|
| Q |
101 |
aatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagta---atttcaacaaa----atttatagtgaaacagaagaaagt |
193 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| ||||||||||| ||||| |||||||| ||||||||| |
|
|
| T |
10887249 |
aatctacttgacctaaataaatattgcagagaaaatcaatcagttatccaaataagtagtaatttcaacaaataaaatttaaagtgaaaccgaagaaagt |
10887348 |
T |
|
| Q |
194 |
tcaaaattgaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcgg |
293 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10887349 |
tcaaaattgaaaattac----ttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcgg |
10887444 |
T |
|
| Q |
294 |
agttgaatcttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccaccggaaacataaatagctttacagcctctattggtgct |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10887445 |
agttgaatcttacaacgggggctctggtcattccgtcgcggagcacaacagcggaagcacctccggaaacataaatagctttacagcctctgttggtgct |
10887544 |
T |
|
| Q |
394 |
tgcaaccaaacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10887545 |
tgcaaccaaacaaccttcggttgttgccatgggcaccgtgtattcattcccgtcgagcaacaaaggaccggcaacacccaccg |
10887627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 2 - 476
Target Start/End: Complemental strand, 39676762 - 39676302
Alignment:
| Q |
2 |
gataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||||||||| | |||| |||||||| |
|
|
| T |
39676762 |
gataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaattctttcctgctatagtagctttaatattttgtaatcttgcaa |
39676663 |
T |
|
| Q |
102 |
atctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagtaatttcaacaaaatttatagtgaaacagaagaaagttcaaaatt |
201 |
Q |
| |
|
|||||||||||||||||| ||||| | | ||||||||| | |||||||||||||| |||||||||||| || ||| ||||||||| |
|
|
| T |
39676662 |
atctacttgacctaaatatatatccaaaacaaaatcaattaattatccaaatgagtcatttcaacaaaaattc--------------aaaattcaaaatt |
39676577 |
T |
|
| Q |
202 |
gaaaattacttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaat |
301 |
Q |
| |
|
|||| ||||||||||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39676576 |
caaaaatacttacttgttgaatgtatgagagatggaatcaaaatttagaggatcttccaaaaagaatttcaactgagaagctcttttagcggagttgaat |
39676477 |
T |
|
| Q |
302 |
cttacaacgggggctctggtcattccgtctcggagcacaacggcagaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaacca |
401 |
Q |
| |
|
||||| || || |||||||||||||| || || || ||||| || ||||||||||| |||||||||||||||||||| ||||| ||||| |||||||| | |
|
|
| T |
39676476 |
cttacgacaggagctctggtcattccatcacgaaggacaactgccgaagcaccaccagaaacataaatagctttacaacctctgttggtacttgcaacta |
39676377 |
T |
|
| Q |
402 |
aacaaccttcggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
476 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| || || || ||||||||||||||||||||||||||||||| |
|
|
| T |
39676376 |
aacaaccttcagtggttgccattggcacggtgtattctttaccatcgagcaacaaaggaccggcaacacccaccg |
39676302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 211 - 476
Target Start/End: Complemental strand, 10046623 - 10046358
Alignment:
| Q |
211 |
ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
10046623 |
ttacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaaaaactttaactgagaagctcttttagcggagttgaatcttacgacg |
10046524 |
T |
|
| Q |
311 |
ggggctctggtcattccgtctcggagcacaacggcagaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaacctt |
410 |
Q |
| |
|
|||||||||||||| || || ||||| ||||| || |||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||| |
|
|
| T |
10046523 |
ggggctctggtcatgccatcacggaggacaaccgcggaagcaccaccggaaacataaatagctttacaacctctattagtacttgcaaccaaacaacctt |
10046424 |
T |
|
| Q |
411 |
cggttgttgccatgggcaccgtgtactcattcccgtcgagcaacaaaggaccggcaacacccaccg |
476 |
Q |
| |
|
| || |||||||| |||||||||||||| ||||| || ||||||||||| |||||||| ||||||| |
|
|
| T |
10046423 |
ccgtcgttgccatcggcaccgtgtactctttcccatcaagcaacaaaggtccggcaactcccaccg |
10046358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 10046864 - 10046746
Alignment:
| Q |
2 |
gataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaa |
101 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| || || ||| |||||||||||||||| ||||| || ||||||||| |||||| ||| |||| |
|
|
| T |
10046864 |
gataccatgttcattcccattgcatcaccggttgaacatgtaaatctaatgtataaattctttcctgccattgttgctttaatattctgtaatctcgcaa |
10046765 |
T |
|
| Q |
102 |
atctacttgacctaaataa |
120 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
10046764 |
atctacttgacctgaataa |
10046746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 411
Target Start/End: Complemental strand, 37948325 - 37948263
Alignment:
| Q |
349 |
agcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttc |
411 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |||||||| || || ||||||||||| ||||| |
|
|
| T |
37948325 |
agcaccaccagaaacatatatagctttacaccctctattagtactagcaaccaaacacccttc |
37948263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 212 - 439
Target Start/End: Original strand, 30709342 - 30709569
Alignment:
| Q |
212 |
tacttgttgaaagtgtgagagagggaatcaaaattttgaggatcttctaaaaagaatttcaactgagaagctcttttggcggagttgaatcttacaacgg |
311 |
Q |
| |
|
||||||||||||||| || || | ||||||||| | |||||||| || || || ||||||| || |||||||||||| || || || ||||| | |
|
|
| T |
30709342 |
tacttgttgaaagtgacagcaagtgtatcaaaattaagcggatcttccaagaaaaacttcaactcagcagctcttttggccgacgaaaacctaacaacag |
30709441 |
T |
|
| Q |
312 |
gggctctggtcattccgtctcggagcacaacggcagaagcaccaccggaaacataaatagctttacagcctctattggtgcttgcaaccaaacaaccttc |
411 |
Q |
| |
|
| |||||||||||||| |||| |||| ||| | |||||| ||||| ||||||| |||||||||||| |||||||| || |||||||| | ||| ||||| |
|
|
| T |
30709442 |
gtgctctggtcattccatctctaagcaaaacagaagaagctccaccagaaacatgaatagctttacaccctctattagtacttgcaacaagacacccttc |
30709541 |
T |
|
| Q |
412 |
ggttgttgccatgggcaccgtgtactca |
439 |
Q |
| |
|
|| || ||||||||||| ||||||||| |
|
|
| T |
30709542 |
agtggtagccatgggcacagtgtactca |
30709569 |
T |
|
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