View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_15 (Length: 460)
Name: NF14664_low_15
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 38724388 - 38723961
Alignment:
| Q |
20 |
gtcttgaacaccagagaatgtgcaattgtaaaaggcagttttattcccagtgatgcgaaccgcaacagcttgttctactttcgacccaataggaaatgaa |
119 |
Q |
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| T |
38724388 |
gtcttgaacaccagagaatgtgcaattgtaaaaggcagttttattcccggtgatgcgaaccgcaacagcttgttctactttcgacccaataggaaatgaa |
38724289 |
T |
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| Q |
120 |
gcagtgttctgttatattataaaagaaataatggaatgagataaaattcaacagtatcaattttatcttattctattctatactttccctccaatattta |
219 |
Q |
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| T |
38724288 |
gcagtgttctgttatattataaaagaaataatggaatgagataaaattcaacaggatcaattttatcttattctattctatactttccctccaatattta |
38724189 |
T |
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| Q |
220 |
tctcaacaaaattctagcccaattaaataaagaaaataatttataatttgagtacctcaaaattaatgttgatggccataaaatagctagcattcacggc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38724188 |
tctcaacaaaattctagcccaattaaataaagaaaataatttatattttgagtacctcaaaattaatgttgatggccataaaatagctagcattcacggc |
38724089 |
T |
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| Q |
320 |
aacagtggcactattgaatgttctcaactgagccccatcgcttccggtgacagattgtgtatcatttccagttatagttggtggatcccttacgtcccct |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38724088 |
aacagtggcactattgaatgttctcaactgagccccatcgcttccggtgacagattgtgtatcatttccagttatagttggtggatcccttacgtcccct |
38723989 |
T |
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| Q |
420 |
aggaatgttatgaaagggagtgtttttg |
447 |
Q |
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| T |
38723988 |
aggaatgttatgaaagggagtgtttttg |
38723961 |
T |
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