View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14664_low_16 (Length: 457)

Name: NF14664_low_16
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14664_low_16
NF14664_low_16
[»] chr6 (4 HSPs)
chr6 (82-326)||(28656097-28656335)
chr6 (4-79)||(28655960-28656035)
chr6 (370-409)||(28656464-28656503)
chr6 (179-265)||(8172829-8172915)
[»] chr2 (1 HSPs)
chr2 (179-281)||(27006954-27007056)
[»] chr4 (2 HSPs)
chr4 (199-275)||(6114974-6115050)
chr4 (181-265)||(29729599-29729683)


Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 82 - 326
Target Start/End: Original strand, 28656097 - 28656335
Alignment:
Q  82 tgaagggggtttgggagtcaatgggtcatgaggaagaagatgagtgagaagaaaacatgtgcgtgatagaatata-gctcaggacttacttaatcaacct 180  Q
    |||||| |||||||||||| |||||||| ||   |||||||||||||||||||||||||||||||| || ||||| | |||||||| |||||||||||||    
T  28656097 tgaaggaggtttgggagtcgatgggtcaaga---agaagatgagtgagaagaaaacatgtgcgtgaaagtatataagttcaggactcacttaatcaacct 28656193  T
Q  181 tttaatttcatccacacattttaatctaatgactactaattattccttttattctcacataaaaatgtcatcctcactagatatgttccatatatgtata 280  Q
    |||||||| || ||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  28656194 tttaattttattcacacattttaatcttatgact-ctaattattctttttattctcacataaaaatgtcatcctcactagctatgtgccatagatgtata 28656292  T
Q  281 tcctagttgttgtactatagaggtactgcactttccctgcatgtcc 326  Q
    |||||   |||||| ||| ||||| || ||||||||||||||||||    
T  28656293 tccta---gttgtattattgaggtgctacactttccctgcatgtcc 28656335  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 28655960 - 28656035
Alignment:
Q  4 gtcggcgaaagggagattcacgacaagaggggttgaaggcggacgaaagattcacatcaatagggacacagaggga 79  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  28655960 gtcggcgaatgggatattcacgacaagaggggttgaaggcggacgaaagattcacatcgatagggacgcagaggga 28656035  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 370 - 409
Target Start/End: Original strand, 28656464 - 28656503
Alignment:
Q  370 ggagtggtattagggagcgagtgttgtgatctatgaagca 409  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  28656464 ggagtggtattagggagggagtgttgtgatctatgaagca 28656503  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 8172829 - 8172915
Alignment:
Q  179 cttttaatttcatccacacattttaatctaatgactactaattattccttttattctcacataaaaatgtcatcctcactagatatg 265  Q
    |||||||| ||| |||||||||||||||||| |  |  || |||||||| | ||||||||||||| |||| || |||||| ||||||    
T  8172829 cttttaatctcagccacacattttaatctaacggttgttatttattcctatcattctcacataaatatgttattctcacttgatatg 8172915  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 27006954 - 27007056
Alignment:
Q  179 cttttaatttcatccacacattttaatctaatgactactaattattccttttattctcacataaaaatgtcatcctcactagatatgttccatatatgta 278  Q
    |||||||| ||| ||| ||||||||||||||||| |  || |||||||| | ||||||||||||| |||| || |||| | ||||||  |||||||| ||    
T  27006954 cttttaatctcagccatacattttaatctaatgattgttatttattcctatcattctcacataaatatgttattctcatttgatatgccccatatatata 27007053  T
Q  279 tat 281  Q
    |||    
T  27007054 tat 27007056  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 6114974 - 6115050
Alignment:
Q  199 ttttaatctaatgactactaattattccttttattctcacataaaaatgtcatcctcactagatatgttccatatat 275  Q
    ||||||||| ||| |||||| ||||||||   ||||||||||| |||||| || |||||| ||||||  ||||||||    
T  6114974 ttttaatctgatgcctactatttattcctaccattctcacatataaatgttattctcacttgatatgccccatatat 6115050  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 29729683 - 29729599
Alignment:
Q  181 tttaatttcatccacacattttaatctaatgactactaattattccttttattctcacataaaaatgtcatcctcactagatatg 265  Q
    |||||| ||| |||||||||||||||||| |  |  || |||||||| | ||||||||||||| |||| || |||||| ||||||    
T  29729683 tttaatctcaaccacacattttaatctaacggttgttatttattcctatcattctcacataaatatgttatgctcacttgatatg 29729599  T

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