View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14664_low_17 (Length: 452)

Name: NF14664_low_17
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14664_low_17
NF14664_low_17
[»] chr2 (21 HSPs)
chr2 (8-452)||(6190777-6191226)
chr2 (353-452)||(855602-855701)
chr2 (320-451)||(8794581-8794708)
chr2 (320-449)||(10077609-10077737)
chr2 (310-451)||(31994756-31994899)
chr2 (320-451)||(34904015-34904146)
chr2 (320-422)||(35954229-35954330)
chr2 (350-432)||(29242613-29242695)
chr2 (353-432)||(24490604-24490683)
chr2 (355-441)||(39293153-39293239)
chr2 (334-402)||(11711229-11711297)
chr2 (356-432)||(30632589-30632665)
chr2 (313-432)||(30669058-30669177)
chr2 (320-449)||(30641060-30641189)
chr2 (364-432)||(30666666-30666734)
chr2 (367-432)||(30620957-30621022)
chr2 (367-432)||(30623578-30623643)
chr2 (353-423)||(43321471-43321541)
chr2 (369-450)||(27694548-27694629)
chr2 (353-390)||(37284276-37284313)
chr2 (353-393)||(434612-434652)
[»] chr8 (23 HSPs)
chr8 (320-451)||(12596858-12596989)
chr8 (328-451)||(26938637-26938760)
chr8 (328-441)||(26938908-26939019)
chr8 (328-449)||(10467519-10467640)
chr8 (359-448)||(39344626-39344715)
chr8 (320-451)||(24916072-24916201)
chr8 (310-451)||(24292213-24292356)
chr8 (328-435)||(8026029-8026136)
chr8 (357-449)||(17219739-17219831)
chr8 (363-450)||(32796980-32797067)
chr8 (353-451)||(33038252-33038350)
chr8 (356-404)||(2414911-2414959)
chr8 (320-432)||(17153542-17153654)
chr8 (357-436)||(17157025-17157104)
chr8 (333-448)||(33695139-33695253)
chr8 (350-422)||(30743926-30743998)
chr8 (337-429)||(42024041-42024132)
chr8 (353-423)||(16483781-16483850)
chr8 (320-418)||(43651364-43651462)
chr8 (333-422)||(15966443-15966532)
chr8 (338-393)||(35865892-35865947)
chr8 (338-393)||(41828016-41828071)
chr8 (322-371)||(16483968-16484017)
[»] chr5 (16 HSPs)
chr5 (320-451)||(39058490-39058621)
chr5 (320-449)||(26724115-26724244)
chr5 (330-451)||(38948537-38948658)
chr5 (320-451)||(14820448-14820579)
chr5 (353-449)||(38607333-38607429)
chr5 (350-452)||(5459170-5459271)
chr5 (353-451)||(16089722-16089820)
chr5 (320-450)||(19343556-19343686)
chr5 (350-452)||(36235788-36235890)
chr5 (320-418)||(21114573-21114671)
chr5 (338-393)||(2160372-2160427)
chr5 (352-419)||(26188823-26188889)
chr5 (338-387)||(3137151-3137200)
chr5 (318-451)||(5159510-5159643)
chr5 (353-423)||(39125870-39125940)
chr5 (365-402)||(2299298-2299335)
[»] scaffold0233 (1 HSPs)
scaffold0233 (320-451)||(16956-17087)
[»] chr6 (21 HSPs)
chr6 (320-451)||(6197815-6197945)
chr6 (320-450)||(3807073-3807203)
chr6 (320-436)||(24672274-24672390)
chr6 (320-441)||(4405818-4405938)
chr6 (320-433)||(10311642-10311755)
chr6 (320-429)||(10516624-10516733)
chr6 (323-449)||(30465192-30465318)
chr6 (320-412)||(4409526-4409617)
chr6 (353-452)||(3336018-3336117)
chr6 (320-451)||(17957034-17957165)
chr6 (320-422)||(25042896-25042997)
chr6 (203-312)||(27775548-27775657)
chr6 (356-421)||(12611835-12611900)
chr6 (338-393)||(17141877-17141932)
chr6 (353-419)||(32003124-32003190)
chr6 (353-450)||(14896838-14896935)
chr6 (351-387)||(10313317-10313353)
chr6 (353-450)||(14198572-14198669)
chr6 (154-202)||(27775521-27775567)
chr6 (407-451)||(17158071-17158115)
chr6 (320-416)||(17158490-17158586)
[»] chr7 (19 HSPs)
chr7 (323-449)||(27567701-27567827)
chr7 (315-432)||(34471222-34471339)
chr7 (320-451)||(25067656-25067787)
chr7 (357-449)||(11297799-11297891)
chr7 (369-449)||(13009400-13009480)
chr7 (333-449)||(30851671-30851787)
chr7 (320-451)||(20132058-20132189)
chr7 (345-435)||(40751680-40751770)
chr7 (353-450)||(12925250-12925347)
chr7 (365-452)||(28098581-28098667)
chr7 (320-450)||(43617069-43617199)
chr7 (320-392)||(28555285-28555357)
chr7 (367-441)||(2316118-2316191)
chr7 (356-402)||(21367210-21367256)
chr7 (356-450)||(28565075-28565169)
chr7 (338-393)||(41232860-41232915)
chr7 (361-402)||(8894549-8894590)
chr7 (365-414)||(39596814-39596863)
chr7 (138-170)||(23145199-23145231)
[»] chr4 (16 HSPs)
chr4 (320-452)||(40390894-40391025)
chr4 (323-451)||(33609950-33610079)
chr4 (323-448)||(15025785-15025910)
chr4 (337-449)||(31050010-31050122)
chr4 (320-391)||(38377812-38377883)
chr4 (338-436)||(22593332-22593430)
chr4 (364-421)||(47472233-47472290)
chr4 (337-421)||(10573973-10574057)
chr4 (320-396)||(15882219-15882295)
chr4 (337-447)||(6449707-6449817)
chr4 (337-402)||(33894467-33894532)
chr4 (364-441)||(6156075-6156152)
chr4 (353-450)||(14806131-14806228)
chr4 (244-312)||(29291241-29291309)
chr4 (333-402)||(30801956-30802024)
chr4 (350-402)||(7117000-7117052)
[»] chr1 (15 HSPs)
chr1 (337-449)||(20985949-20986061)
chr1 (320-452)||(33752992-33753123)
chr1 (353-449)||(13392847-13392944)
chr1 (337-423)||(1444985-1445070)
chr1 (353-451)||(16545443-16545540)
chr1 (353-418)||(3891483-3891548)
chr1 (350-402)||(37471014-37471066)
chr1 (353-449)||(50919316-50919411)
chr1 (350-435)||(29102871-29102956)
chr1 (338-393)||(14941096-14941151)
chr1 (338-393)||(14951103-14951158)
chr1 (338-393)||(14955344-14955399)
chr1 (328-414)||(29307657-29307743)
chr1 (343-402)||(15800836-15800895)
chr1 (345-402)||(50773681-50773734)
[»] chr3 (20 HSPs)
chr3 (320-435)||(20336785-20336900)
chr3 (328-450)||(20314900-20315022)
chr3 (320-430)||(39340775-39340885)
chr3 (320-451)||(34359335-34359466)
chr3 (365-450)||(28769540-28769625)
chr3 (320-451)||(44446885-44447016)
chr3 (344-402)||(13899492-13899550)
chr3 (369-435)||(16876437-16876503)
chr3 (350-435)||(22853421-22853504)
chr3 (312-394)||(52423004-52423086)
chr3 (323-451)||(50334666-50334796)
chr3 (356-449)||(38673319-38673412)
chr3 (351-451)||(45743765-45743865)
chr3 (332-449)||(17268847-17268964)
chr3 (353-450)||(16607606-16607703)
chr3 (368-418)||(9766048-9766098)
chr3 (337-377)||(16876101-16876141)
chr3 (338-402)||(18085360-18085424)
chr3 (350-402)||(28997853-28997905)
chr3 (330-390)||(50358479-50358539)
[»] scaffold0020 (1 HSPs)
scaffold0020 (350-452)||(152202-152304)
[»] scaffold0036 (1 HSPs)
scaffold0036 (370-449)||(48461-48540)
[»] scaffold0720 (1 HSPs)
scaffold0720 (320-449)||(5500-5629)
[»] scaffold0478 (2 HSPs)
scaffold0478 (320-432)||(8604-8716)
scaffold0478 (320-394)||(3226-3300)
[»] scaffold1911 (1 HSPs)
scaffold1911 (357-432)||(22-97)
[»] scaffold0002 (1 HSPs)
scaffold0002 (353-450)||(363106-363203)
[»] scaffold0264 (1 HSPs)
scaffold0264 (355-421)||(19789-19855)
[»] scaffold0005 (2 HSPs)
scaffold0005 (353-450)||(33499-33596)
scaffold0005 (353-451)||(253779-253876)
[»] scaffold0536 (1 HSPs)
scaffold0536 (335-391)||(3875-3931)


Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 452
Target Start/End: Original strand, 6190777 - 6191226
Alignment:
Q  8 aaaagattgcatataaattgatttttgtcttcttgtataaaattgaaggatcattcttgaccgnnnnnnnngt-gcaggtaatt----gatattgtaatt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        || ||||||||||    ||||||||||||    
T  6190777 aaaagattgcatataaattgatttttgtcttcttgtataaaattgaaggatcattcttgaccgaaaaaaaagttgcaggtaattcattgatattgtaatt 6190876  T
Q  103 gtaaatatcataacaaccttctatggttaaatttaattgatagggtaacagggagttgtaagcttaatagacacgcctctatcttggtctgccgtattca 202  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  6190877 gtaaatatcataacaaccttctatgattgaatttaattgatagggtaatagggagttgtaagcttaatagacacgcctctattttggtctgctgtattca 6190976  T
Q  203 atcttggtctgttgtattcaggatcttgttagtttacatgacaatattgcttttaatcacacatggcgtgagagaaacaaatgtgttgattggttggcta 302  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6190977 atctttgtctgctgtattcaggatcttgttagtttacatgacaatattgcttttaatcacacatggcgtgagagaaacaaatgtgttgattggttggcta 6191076  T
Q  303 attttagtttgggttaaatgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    |||||||||||||||||||||||| ||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6191077 attttagtttgggttaaatgtttttagtatctataaaatcattagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 6191176  T
Q  403 cgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaatga 452  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6191177 tgtactttgtaagaatagtccgtattttgaaaactttttacaaaaaatga 6191226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 353 - 452
Target Start/End: Original strand, 855602 - 855701
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaatga 452  Q
    ||||||||||||||||||||||||||||||||||||||||||  | |||| ||| |||||| ||||||||| |||||||||||| |||||||||||||||    
T  855602 aagtttagtccctataaaattttaatggtaattttagtcctcggtgatattgtagtttgtaggaatagtccatattttgaaaactttttacaaaaaatga 855701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 8794581 - 8794708
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||   ||||||| ||| || |||||||||    
T  8794581 atgttttcagtccctacaaaatcacaaattttcaagtttagtcc-tataaaattttaatggtaattttagtcc---ataatattgtaattcgtaagaata 8794676  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||| |||||| ||||| ||||||||||||||    
T  8794677 gtccctattttaaaaactttttacaaaaaatg 8794708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 320 - 449
Target Start/End: Original strand, 10077609 - 10077737
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| ||||| |  |||||||  ||| ||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||| ||||||| ||||    
T  10077609 atgtttttagtctttgcaaaatcatgagttttcaagtttagtccctataaa-ttttaatggtaattttaatccttcataatattgtagtttgtaataata 10077707  T
Q  420 gtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||| |||||||||||| ||||||||||||    
T  10077708 gtccctattttgaaaactttttacaaaaaa 10077737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 310 - 451
Target Start/End: Complemental strand, 31994899 - 31994756
Alignment:
Q  310 tttgggttaa--atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtac 407  Q
    ||||||||||  ||||||| |||| ||| |||||||||| | || ||||||| ||||| |||||||||||| ||||||||||| ||||||||||| |||     
T  31994899 tttgggttaagtatgtttttagtccctacaaaatcacaaatttttaagtttaatccctttaaaattttaatagtaattttagttctccataatattgtaa 31994800  T
Q  408 tttgtaagaatagtccgtattttgaaaaccttttacaaaaaatg 451  Q
    ||||||||||||||||  ||||||||||| ||||  ||||||||    
T  31994799 tttgtaagaatagtcccaattttgaaaactttttttaaaaaatg 31994756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 34904015 - 34904146
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||||||| || ||||||||||||| ||||||| ||||  |||||||||| || |||||||| ||| ||||||||||||    
T  34904015 atgtttttagtccctacaaaatcacaagtttttaagtttagtccctgtaaaattgtaataataattttagttcttcataatattgtagtttgtaagaata 34904114  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
     ||| |||||||||||| ||||||||| ||||    
T  34904115 atccctattttgaaaactttttacaaagaatg 34904146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 320 - 422
Target Start/End: Original strand, 35954229 - 35954330
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||    
T  35954229 atgtttttagtccctataaa-tcacaagttttaaagtttagtccctattaaattttaatggtaattttagtcctcaataatattgtagtttgtaagaata 35954327  T
Q  420 gtc 422  Q
    |||    
T  35954328 gtc 35954330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 350 - 432
Target Start/End: Complemental strand, 29242695 - 29242613
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttga 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  ||||  || |||||||||||||||| ||||||||    
T  29242695 ttcaagtttagtccctataaaattttaatggtaattttagtcctcgaagatattatagtttgtaagaatagtccctattttga 29242613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 432
Target Start/End: Complemental strand, 24490683 - 24490604
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttga 432  Q
    |||||||||| ||||||||||||||| ||||||||||||||| | ||||| ||| |||||||||||| ||| ||||||||    
T  24490683 aagtttagtctctataaaattttaatagtaattttagtcctctacaatattgtagtttgtaagaataatccctattttga 24490604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 441
Target Start/End: Complemental strand, 39293239 - 39293153
Alignment:
Q  355 gtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaacctttt 441  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||||| ||| ||||||| |||||| | |||||| ||||| ||||    
T  39293239 gtttaatccctataaaattttaatggtaattttagtcctctaaaatattgtaatttgtaataatagttcctattttaaaaacatttt 39293153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 11711297 - 11711229
Alignment:
Q  334 tataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    ||||||||||| ||  ||||||||||||||||||||||||||||  |||| |||| |||||||||||||    
T  11711297 tataaaatcacgagctttcaagtttagtccctataaaattttaagtgtaagtttaatcctccataatat 11711229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 356 - 432
Target Start/End: Complemental strand, 30632665 - 30632589
Alignment:
Q  356 tttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttga 432  Q
    ||||||| |||||||||||||||||||||||||||| |  ||||||| ||| ||||||  |||||||| ||||||||    
T  30632665 tttagtctctataaaattttaatggtaattttagtcttggataatattgtagtttgtacaaatagtccctattttga 30632589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 432
Target Start/End: Complemental strand, 30669177 - 30669058
Alignment:
Q  313 gggttaaatgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgt 412  Q
    ||||||||| | || ||| |||| ||| ||| |||| || || ||||||| |||||||||||||||||||||||||||| |  |||||||  || |||||    
T  30669177 gggttaaatatgtttagtatctaaaaattcagaagtttttaattttagtctctataaaattttaatggtaattttagtcttgaataatattatagtttgt 30669078  T
Q  413 aagaatagtccgtattttga 432  Q
    |  |||||||| ||||||||    
T  30669077 acaaatagtccctattttga 30669058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 320 - 449
Target Start/End: Complemental strand, 30641189 - 30641060
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| || ||||  ||| || ||| ||||||| ||| ||||||||||||||  |||||||||||  |||||  || ||||||| | ||    
T  30641189 atgtttttagtccctacaatatcatgagtttttaagcttagtccatatgaaattttaatggtatatttagtcctccgaaatattttagtttgtaaaagta 30641090  T
Q  420 gtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||| |||||||||||| || |||||||||    
T  30641089 gtccctattttgaaaactttatacaaaaaa 30641060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 432
Target Start/End: Complemental strand, 30666734 - 30666666
Alignment:
Q  364 ctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttga 432  Q
    |||||||||||||||||||||||||||| |  ||||||| ||| ||||||  |||||||| ||||||||    
T  30666734 ctataaaattttaatggtaattttagtcttgaataatattgtagtttgtacaaatagtccctattttga 30666666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 30621022 - 30620957
Alignment:
Q  367 taaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttga 432  Q
    ||||||||||||||||||||||||| |  ||||||| ||| ||||||  |||||||| ||||||||    
T  30621022 taaaattttaatggtaattttagtcttgaataatattgtagtttgtacaaatagtccctattttga 30620957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 367 - 432
Target Start/End: Complemental strand, 30623643 - 30623578
Alignment:
Q  367 taaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttga 432  Q
    ||||||||||||||||||||||||| |  ||||||| ||| ||||||  |||||||| ||||||||    
T  30623643 taaaattttaatggtaattttagtcttgaataatattgtagtttgtacaaatagtccctattttga 30623578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 423
Target Start/End: Original strand, 43321471 - 43321541
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtcc 423  Q
    |||||||||| |||| ||||| |||| ||||||||| | ||||||||||| | | |||||| |||||||||    
T  43321471 aagtttagtctctattaaattctaatcgtaattttatttctccataatattgcaatttgtaggaatagtcc 43321541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 450
Target Start/End: Complemental strand, 27694629 - 27694548
Alignment:
Q  369 aaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    ||||||||| |||||||||| ||||||| ||||| ||  || |||| | | |||| |||||| ||||| |||||||||||||    
T  27694629 aaattttaaaggtaattttaatcctccaaaatattgtggttcgtaaaagtggtccctattttaaaaactttttacaaaaaat 27694548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 390
Target Start/End: Complemental strand, 37284313 - 37284276
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagt 390  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  37284313 aagtttagtccctataaaattttaatgatgattttagt 37284276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 434652 - 434612
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcct 393  Q
    ||||||||||  ||||||||||||||||| |||||||||||    
T  434652 aagtttagtcaatataaaattttaatggtgattttagtcct 434612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 12596858 - 12596989
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||||||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||| | ||    
T  12596858 atgtttttagtctctacaaaatcataagtttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaaaatta 12596957  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||  |||||||||||| ||||||||||||||    
T  12596958 gtctctattttgaaaacattttacaaaaaatg 12596989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 328 - 451
Target Start/End: Complemental strand, 26938760 - 26938637
Alignment:
Q  328 agtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtat 427  Q
    |||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||| |||    
T  26938760 agtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaatttttgtcctccataatttagtagtttgtaagaatagtccctat 26938661  T
Q  428 tttgaaaaccttttacaaaaaatg 451  Q
    ||||||||| ||||  ||||||||    
T  26938660 tttgaaaacttttttgaaaaaatg 26938637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 328 - 441
Target Start/End: Complemental strand, 26939019 - 26938908
Alignment:
Q  328 agtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtat 427  Q
    |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||  |||||||||||||||| |||    
T  26939019 agtccctataaaatcataagttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatttagt--tttgtaagaatagtccctat 26938922  T
Q  428 tttgaaaacctttt 441  Q
    ||||||||| ||||    
T  26938921 tttgaaaacttttt 26938908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 328 - 449
Target Start/End: Complemental strand, 10467640 - 10467519
Alignment:
Q  328 agtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtat 427  Q
    |||||||| |||||||||| | || ||||||| ||| |||||||||||||||||||||||| ||||||||||||| |||  ||||||||||||||| |||    
T  10467640 agtctctacaaaatcacaaatttttaagtttattccttataaaattttaatggtaattttaatcctccataatattgtaacttgtaagaatagtccctat 10467541  T
Q  428 tttgaaaaccttttacaaaaaa 449  Q
    ||||||||| ||||||||||||    
T  10467540 tttgaaaactttttacaaaaaa 10467519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 359 - 448
Target Start/End: Original strand, 39344626 - 39344715
Alignment:
Q  359 agtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaa 448  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||| | |||||||||||||||||| |||||    
T  39344626 agtccctataaaattttaatggtaactttagtcctccataatattgtagtttgtaagaatagttcatattttgaaaaccttttaaaaaaa 39344715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 320 - 451
Target Start/End: Complemental strand, 24916201 - 24916072
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| ||||  ||||||||||  ||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| ||||||| ||||    
T  24916201 atgtttttagtccatataaaatcatgagtttttaagtttagtccctataaaattttaatggtaattttcgtcctccaaaatat-gtagtttgtaaaaata 24916103  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||| ||||||| |||| ||||| ||||||||    
T  24916102 gtcc-tattttggaaactttttagaaaaaatg 24916072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 310 - 451
Target Start/End: Complemental strand, 24292356 - 24292213
Alignment:
Q  310 tttgggttaaatgt--tttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtac 407  Q
    ||||||||||||||  ||| |||| ||| |||||||||||  |||||||||||||||||| |||||||||| |||||||||||||| ||||| || |       
T  24292356 tttgggttaaatgtgtttttagtccctaaaaaatcacaagctttcaagtttagtccctattaaattttaattgtaattttagtccttcataaaattgatg 24292257  T
Q  408 tttgtaagaatagtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||||||||| ||||| |||||| |||   ||||| ||||||||    
T  24292256 tttgtaagaacagtccctattttaaaagatttttataaaaaatg 24292213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 328 - 435
Target Start/End: Original strand, 8026029 - 8026136
Alignment:
Q  328 agtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtat 427  Q
    |||| ||||||||| |||| | || ||||||| || |||||||||||||||||| ||| |||||||||||||| | ||| |||||||||||||||| |||    
T  8026029 agtccctataaaattacaaattttaaagtttaatctctataaaattttaatggtgattgtagtcctccataatttagtagtttgtaagaatagtccctat 8026128  T
Q  428 tttgaaaa 435  Q
    ||| ||||    
T  8026129 tttaaaaa 8026136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 449
Target Start/End: Complemental strand, 17219831 - 17219739
Alignment:
Q  357 ttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    ||||||||||| ||||||||||||||||||||||||| |  |||||  || ||||||| |||||||| |||||||||||| || |||||||||    
T  17219831 ttagtccctatgaaattttaatggtaattttagtccttctaaatattttagtttgtaaaaatagtccctattttgaaaactttatacaaaaaa 17219739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 363 - 450
Target Start/End: Original strand, 32796980 - 32797067
Alignment:
Q  363 cctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    |||||||| ||||||| ||||||||||||||| | | ||| ||| |||||||||||||||| |||||| ||||| |||||||||||||    
T  32796980 cctataaatttttaatagtaattttagtcctctaaagtattgtagtttgtaagaatagtccatattttaaaaactttttacaaaaaat 32797067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 33038252 - 33038350
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaatg 451  Q
    ||||||||| ||||| |||||||||||  ||||||| ||||||||||||| | | |||||||||||||| | |||||| ||||| ||||||| ||||||    
T  33038252 aagtttagttcctattaaattttaatgaaaattttaatcctccataatattgcagtttgtaagaatagttcctattttaaaaactttttacagaaaatg 33038350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 2414911 - 2414959
Alignment:
Q  356 tttagtccctataaaattttaatggtaattttagtcctccataatatcg 404  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2414911 tttagtccctataaaattttaatggtaattttagtcctctataatatcg 2414959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 320 - 432
Target Start/End: Original strand, 17153542 - 17153654
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||  ||| || ||| ||||||||||| |||||||||||||||||||||||||||| |||||   | ||||| | ||||    
T  17153542 atgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttgttaaaata 17153641  T
Q  420 gtccgtattttga 432  Q
    |||| ||||||||    
T  17153642 gtccctattttga 17153654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 357 - 436
Target Start/End: Complemental strand, 17157104 - 17157025
Alignment:
Q  357 ttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaac 436  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||  || ||||| | ||||| || ||||||||||||    
T  17157104 ttagtccctatgaaattttaatggtaattttagtcctccaaaatattttagtttgttaaaatagcccctattttgaaaac 17157025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 333 - 448
Target Start/End: Original strand, 33695139 - 33695253
Alignment:
Q  333 ctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttga 432  Q
    ||||||||| |  ||| |||||||||||||  ||||||| ||||||| |||||||||||||| | |||||  ||| ||||||||||||||  ||||||||    
T  33695139 ctataaaattatgagttttcaagtttagtctttataaaactttaatgataattttagtcctctacaatattatac-ttgtaagaatagtctttattttga 33695237  T
Q  433 aaaccttttacaaaaa 448  Q
    |||  |||||||||||    
T  33695238 aaagattttacaaaaa 33695253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 422
Target Start/End: Original strand, 30743926 - 30743998
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtc 422  Q
    ||||| |||||| ||||||||| ||||||| |||||||||||||| ||||||| ||| ||||||| |||||||    
T  30743926 ttcaaatttagtacctataaaactttaatgttaattttagtcctcaataatattgtagtttgtaaaaatagtc 30743998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 429
Target Start/End: Complemental strand, 42024132 - 42024041
Alignment:
Q  337 aaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattt 429  Q
    |||||||| ||| ||  ||||||||||| |||||||||||||| |||||||||||||||| ||||| |||  |||||| |||||||| |||||    
T  42024132 aaaatcacgagtttttgagtttagtccccataaaattttaatgctaattttagtcctccaaaatattgta-gttgtaataatagtccctattt 42024041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 353 - 423
Target Start/End: Original strand, 16483781 - 16483850
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtcc 423  Q
    ||||||||||||| |||||||||||||||||||||||| || || ||||| ||| ||||||| ||||||||    
T  16483781 aagtttagtccctgtaaaattttaatggtaattttagt-cttcaaaatattgtagtttgtaaaaatagtcc 16483850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 43651364 - 43651462
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaat 418  Q
    ||||||| ||| |||||||||||| ||   || |||||||||  ||| |||||||||||| |||||||||||| ||| ||||| ||| |||||||||||    
T  43651364 atgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtccaccacaatattgtagtttgtaagaat 43651462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 15966443 - 15966532
Alignment:
Q  333 ctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtc 422  Q
    |||||||||||  ||| |||||||||| |  |||| |||||||||||||| |||||||| | |||| ||| | | |||||||||||||||    
T  15966443 ctataaaatcatgagttttcaagtttatttgctattaaattttaatggtacttttagtctttcatactattgcattttgtaagaatagtc 15966532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 35865892 - 35865947
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcct 393  Q
    ||||||||||| || |||||||||   |||||||||||||||||||||||| ||||    
T  35865892 aaatcacaagtttttaagtttagttgatataaaattttaatggtaattttaatcct 35865947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 41828016 - 41828071
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcct 393  Q
    |||||| |||| || ||||||||||  |||||||||||||||||||||||| ||||    
T  41828016 aaatcataagtttttaagtttagtcgatataaaattttaatggtaattttaatcct 41828071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 371
Target Start/End: Complemental strand, 16484017 - 16483968
Alignment:
Q  322 gttttaagtctctataaaatcacaagtattcaagtttagtccctataaaa 371  Q
    ||||| |||| ||||||||| |||||| |||||||||||||| |||||||    
T  16484017 gtttttagtccctataaaattacaagttttcaagtttagtccttataaaa 16483968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 320 - 451
Target Start/End: Complemental strand, 39058621 - 39058490
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| | || |||||||||||||||| || |||||||  |||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||    
T  39058621 atgtttttaatccctataaaatcacaagtttttaagtttaacccctataaaattttaatggtaattttagtcctccataacattgtagtttgtaagaata 39058522  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||| |||||||||||| ||||||||| ||||    
T  39058521 gtccttattttgaaaactttttacaaacaatg 39058490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 320 - 449
Target Start/End: Original strand, 26724115 - 26724244
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||  || ||| ||| |||||| |    
T  26724115 atgtttttagtccctacaaaatcacgagttttcgagtttagtccctataaaattttaatggtaattttagtcgtccatagaattgtaatttataagaaca 26724214  T
Q  420 gtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||| |||||||||||| ||||||||||||    
T  26724215 gtccctattttgaaaactttttacaaaaaa 26724244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 330 - 451
Target Start/End: Original strand, 38948537 - 38948658
Alignment:
Q  330 tctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattt 429  Q
    |||||| |||||||||||| ||||| |||||||  ||||||||||||||| ||||||||||||| |||||| | ||| ||| ||||| |||| | |||||    
T  38948537 tctctacaaaatcacaagttttcaaatttagtctatataaaattttaatgataattttagtccttcataatttagtagtttataagattagttcatattt 38948636  T
Q  430 tgaaaaccttttacaaaaaatg 451  Q
    | ||||| ||||||||||||||    
T  38948637 taaaaactttttacaaaaaatg 38948658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 451
Target Start/End: Complemental strand, 14820579 - 14820448
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||  ||||||||||| |||| |||||||||||||| || ||||||||| |||||||||||  |||| ||||||  ||| ||||||| ||||    
T  14820579 atgtttttagttcctataaaatcataagttttcaagtttagtccttacaaaattttagtggtaattttaaccctctataataatgtagtttgtaaaaata 14820480  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
     ||| |||||| ||||| ||||| ||||||||    
T  14820479 atccatattttaaaaactttttataaaaaatg 14820448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 449
Target Start/End: Original strand, 38607333 - 38607429
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||||||||  ||||||||||||||| |||||||||||||| |||||||| ||| ||| | |||||||||| |||||||||||| | |||| |||||    
T  38607333 aagtttagtttctataaaattttaattgtaattttagtccttcataatattgtagttttttagaatagtccttattttgaaaacttgttaccaaaaa 38607429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 452
Target Start/End: Complemental strand, 5459271 - 5459170
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||  || ||| ||||||| |||| ||||||  |||  || |||||||||    
T  5459271 ttcaagtttagtccctataaaattttaatggtaaatttagtccttcataatattatagtttataagaat-gtccctattttttaaattttctacaaaaaa 5459173  T
Q  450 tga 452  Q
    |||    
T  5459172 tga 5459170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 16089722 - 16089820
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||||||||||| ||||||||||||| ||||||||||||||  | |||||  || |||||||||||||||  | |||| ||||| ||||||||||||||    
T  16089722 aagtttagtcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaatagtctctgtttttaaaactttttacaaaaaatg 16089820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 450
Target Start/End: Original strand, 19343556 - 19343686
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||  ||| |||||||  ||| || |||||||||| ||||||||||||| || |||||||||||||  | ||||| ||| ||||||| ||||    
T  19343556 atgtttttagtacctacaaaatcatgagtttttaagtttagtctctataaaattttagtgataattttagtcctaaaaaatattgtagtttgtaaaaata 19343655  T
Q  420 gtccgtattttgaaaaccttttacaaaaaat 450  Q
    || | |||||| ||||| |||||||||||||    
T  19343656 gttcatattttaaaaactttttacaaaaaat 19343686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 452
Target Start/End: Original strand, 36235788 - 36235890
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    ||||| |||| | ||||||||||||||| ||||||||||| ||||||||||||  || |||||||||| |||||  ||||| ||||| ||||| ||||||    
T  36235788 ttcaaatttaattcctataaaattttaagggtaattttagccctccataatattttagtttgtaagaacagtccccattttaaaaactttttataaaaaa 36235887  T
Q  450 tga 452  Q
    |||    
T  36235888 tga 36235890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 320 - 418
Target Start/End: Original strand, 21114573 - 21114671
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaat 418  Q
    ||||||| ||| |||||||||||| ||   || |||||||||  ||| |||||||||||| |||||||||||| ||||||||| ||| |||||||||||    
T  21114573 atgtttttagtatctataaaatcagaaacttttaagtttagtttctagaaaattttaatgataattttagtccaccataatattgtagtttgtaagaat 21114671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 2160372 - 2160427
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcct 393  Q
    ||||||||||| || ||||||||||  |||||||||||||||||||||||| ||||    
T  2160372 aaatcacaagtttttaagtttagtcgatataaaattttaatggtaattttaatcct 2160427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 419
Target Start/End: Complemental strand, 26188889 - 26188823
Alignment:
Q  352 caagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    |||||||||| |||||||| ||||||| |||||||||||| ||||| |||| ||| ||||||||||||    
T  26188889 caagtttagttcctataaa-ttttaatagtaattttagtcatccatcatattgtagtttgtaagaata 26188823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 387
Target Start/End: Original strand, 3137151 - 3137200
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaatttt 387  Q
    ||||||||||| || ||||||||||  |||||||||||||||||||||||    
T  3137151 aaatcacaagtttttaagtttagtcaatataaaattttaatggtaatttt 3137200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 318 - 451
Target Start/End: Complemental strand, 5159643 - 5159510
Alignment:
Q  318 aaatgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaa 417  Q
    ||||||||| |||| |||  ||||||  ||| || | |||||||| ||||||||||||||| ||||||||| ||||  | | |||  || ||| ||| ||    
T  5159643 aaatgtttttagtccctaccaaatcatgagtttttaggtttagtctctataaaattttaatagtaattttaatcctaaaaattattatagtttctaaaaa 5159544  T
Q  418 tagtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||||| |||||| ||||| ||| ||||||||||    
T  5159543 tagtccttattttaaaaacttttaacaaaaaatg 5159510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 39125940 - 39125870
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtcc 423  Q
    ||||||| ||||||| || ||||||| |||||||||||||| ||||||||  || |||  |||||||||||    
T  39125940 aagtttaatccctatgaagttttaattgtaattttagtccttcataatattatatttttcaagaatagtcc 39125870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 402
Target Start/End: Original strand, 2299298 - 2299335
Alignment:
Q  365 tataaaattttaatggtaattttagtcctccataatat 402  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  2299298 tataaaattttaatggtaattttagtcttccacaatat 2299335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 320 - 451
Target Start/End: Complemental strand, 17087 - 16956
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| |||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||||| || ||||| | | ||||||||||||    
T  17087 atgtttttagtccctataaaatcacgagttttcaggtttaatccctataaaattttaatggtaattttagtcctacaaaatatagcaatttgtaagaata 16988  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||| |||||||||||| |||||| |||||||    
T  16987 gtccctattttgaaaacgttttactaaaaatg 16956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 6197815 - 6197945
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| |||||||||||||| | |||||||||||||| ||||||||||||||||||| |||||||||||||||| | ||| ||||||||||||    
T  6197815 atgtttttagtccctataaaatcacaatt-ttcaagtttagtccatataaaattttaatggtaaatttagtcctccataatttagtagtttgtaagaata 6197913  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||  |||||||||||| ||||| ||||||||    
T  6197914 gtctctattttgaaaactttttagaaaaaatg 6197945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 320 - 450
Target Start/End: Original strand, 3807073 - 3807203
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||||||||||| |||| || | |||||||| |||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||    
T  3807073 atgtttttagtccctataaaatcataagtttttatgtttagtctctataaaattttaatggtaattttcgtcctccataatttagtagtttgtaagaata 3807172  T
Q  420 gtccgtattttgaaaaccttttacaaaaaat 450  Q
    |||| |||||||||||| ||| |||||||||    
T  3807173 gtccctattttgaaaacttttaacaaaaaat 3807203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 320 - 436
Target Start/End: Original strand, 24672274 - 24672390
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| | |||||| ||| |||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||    
T  24672274 atgtttttaatctctacaaattcacgatttttcaagtttagtccctataaaattttaatggtaattttagtcctccataatattgtaatttgtaataata 24672373  T
Q  420 gtccgtattttgaaaac 436  Q
    |||  |||||| |||||    
T  24672374 gtctctattttaaaaac 24672390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 320 - 441
Target Start/End: Complemental strand, 4405938 - 4405818
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| ||||||| |||| || |||||||||||||||||||| ||||||||||||||  |||||||||||||  |||||||||||||||    
T  4405938 atgtttttagtc-ctacaaaatcataagtttttaagtttagtccctataaaatattaatggtaatttttatcctccataatattctactttgtaagaata 4405840  T
Q  420 gtccgtattttgaaaacctttt 441  Q
    ||| |||||| |||||| ||||    
T  4405839 gtctgtatttggaaaacttttt 4405818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 320 - 433
Target Start/End: Original strand, 10311642 - 10311755
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||||||||  ||||||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||| || | ||||| ||| |||||||||||     
T  10311642 atgttttaagtccttataaaatcacgagttttcaaatttagttcctataaaattttaatggtaattttagtcatcaacaatattgtaatttgtaagaatg 10311741  T
Q  420 gtccgtattttgaa 433  Q
    |||| |||||||||    
T  10311742 gtccttattttgaa 10311755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 320 - 429
Target Start/End: Complemental strand, 10516733 - 10516624
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| ||||||| |||| || || |||||||||||||||||| ||||| ||||||||| |||||||||||| ||| ||||||||||||    
T  10516733 atgtttttagtccctacaaaatcataagtttttaaatttagtccctataaaattgtaatgataattttagccctccataatattgtagtttgtaagaata 10516634  T
Q  420 gtccgtattt 429  Q
    |||| |||||    
T  10516633 gtccctattt 10516624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 323 - 449
Target Start/End: Complemental strand, 30465318 - 30465192
Alignment:
Q  323 ttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtc 422  Q
    |||| |||| ||||||||| |  ||| ||||| |||||  ||||||||||||||||||||||||||||  |||||||||| | | |||||||||||||||    
T  30465318 tttttagtccctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgtaagaatagtc 30465219  T
Q  423 cgtattttgaaaaccttttacaaaaaa 449  Q
    | |||||| ||||  ||| ||||||||    
T  30465218 cctattttaaaaaattttgacaaaaaa 30465192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 320 - 412
Target Start/End: Complemental strand, 4409617 - 4409526
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgt 412  Q
    ||||||| |||| ||| |||||||||||| || ||||||| |||||||||||| | |||||||||||||||||||||||||||  ||||||||    
T  4409617 atgtttttagtc-ctacaaaatcacaagtttttaagtttaatccctataaaatatcaatggtaattttagtcctccataatattctactttgt 4409526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 353 - 452
Target Start/End: Complemental strand, 3336117 - 3336018
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaatga 452  Q
    |||||||| ||||||||||||||| ||||||||||||||||| | ||||| ||| |||||| |||||||   |||| ||||||| |||||||| ||||||    
T  3336117 aagtttagaccctataaaattttagtggtaattttagtcctctaaaatattgtaatttgtatgaatagttgttattctgaaaactttttacaataaatga 3336018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 17957034 - 17957165
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||||| ||| |  ||| || ||||||||| || ||||||||||||| ||||||||||||||  | |||||  || ||||||||||||    
T  17957034 atgtttttagtccctatataattatgagtttttaagtttagttccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaata 17957133  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||  | |||||||||| ||||||||||||||    
T  17957134 gtctctgttttgaaaactttttacaaaaaatg 17957165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 422
Target Start/End: Complemental strand, 25042997 - 25042896
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||  ||| ||||| |||||||| ||||||||||||||||||||||||||||||  | |||| ||| ||||||||||||    
T  25042997 atgtttttagtccctacaaaatcatgagttttcaaatttagtcc-tataaaattttaatggtaattttagtcctctgtgatattgtagtttgtaagaata 25042899  T
Q  420 gtc 422  Q
    |||    
T  25042898 gtc 25042896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 27775548 - 27775657
Alignment:
Q  203 atcttggtctgttgtattcaggatcttgttagtttacatgacaatattgcttttaatcacacatggcgtgagagaaacaaatgtgttgattggttggcta 302  Q
    ||||||||| |  ||||||||||||| |  |  |||||||| ||||||| |  ||| |||||||| || | ||||||||||||||||||||||||| |||    
T  27775548 atcttggtccgccgtattcaggatctcgccatcttacatgaaaatattgttactaagcacacatgccgcgcgagaaacaaatgtgttgattggttgacta 27775647  T
Q  303 attttagttt 312  Q
    ||||||||||    
T  27775648 attttagttt 27775657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 421
Target Start/End: Original strand, 12611835 - 12611900
Alignment:
Q  356 tttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagt 421  Q
    |||| ||||| ||||||||||||||||||||||||||||||||| ||  || ||| ||||||||||    
T  12611835 tttaatccctctaaaattttaatggtaattttagtcctccataacattatagtttataagaatagt 12611900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 17141932 - 17141877
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcct 393  Q
    |||||| |||| || ||||||||||  |||||||||||||||||||||||||||||    
T  17141932 aaatcataagtttttaagtttagtcgatataaaattttaatggtaattttagtcct 17141877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 419
Target Start/End: Complemental strand, 32003190 - 32003124
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||||||| ||| ||||||||||||||||||| || ||||||||||| ||| ||| || |||||    
T  32003190 aagtttagtccttattaaattttaatggtaattttggtgctccataatattgtagtttatatgaata 32003124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 14896838 - 14896935
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||| || ||  || ||| ||| |||| ||| |||||| | ||| |||| ||||||||    
T  14896838 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttagaacttttttcaaaaaat 14896935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 387
Target Start/End: Original strand, 10313317 - 10313353
Alignment:
Q  351 tcaagtttagtccctataaaattttaatggtaatttt 387  Q
    |||||||||||||||||||||||||||| ||||||||    
T  10313317 tcaagtttagtccctataaaattttaatagtaatttt 10313353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 14198669 - 14198572
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    ||||||||| ||||||||||||||||| | |||||||| ||||| || ||  || ||| ||  |||| ||| |||||| ||||| ||||| |||||||    
T  14198669 aagtttagttcctataaaattttaatgatgattttagttctccaaaaaattataatttttactaataatccttatttttaaaactttttataaaaaat 14198572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 27775521 - 27775567
Alignment:
Q  154 ggagttgtaagcttaatagacacgcctctatcttggtctgccgtattca 202  Q
    ||||||||||||||||||||||  || ||||||||||| ||||||||||    
T  27775521 ggagttgtaagcttaatagaca--cccctatcttggtccgccgtattca 27775567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 451
Target Start/End: Complemental strand, 17158115 - 17158071
Alignment:
Q  407 ctttgtaagaatagtccgtattttgaaaaccttttacaaaaaatg 451  Q
    ||||||||||||| ||  |||||||||||| ||||||||||||||    
T  17158115 ctttgtaagaataatctctattttgaaaactttttacaaaaaatg 17158071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 416
Target Start/End: Complemental strand, 17158586 - 17158490
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaaga 416  Q
    ||||||| |||| ||||||||| |  ||| |||| ||| |||||||| || |||||||| |||||||||||| | || |||||  || |||||||||    
T  17158586 atgtttttagtccctataaaattatgagttttcacgttgagtccctacaacattttaatagtaattttagtctttcaaaatattatagtttgtaaga 17158490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 323 - 449
Target Start/End: Complemental strand, 27567827 - 27567701
Alignment:
Q  323 ttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtc 422  Q
    |||| |||| ||| |||||||  ||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||    
T  27567827 tttttagtccctacaaaatcatgagttttaaagtttattccctataaaattttaatggtaattttagtcctacataatattgtagtttgtaagaatagtc 27567728  T
Q  423 cgtattttgaaaaccttttacaaaaaa 449  Q
    | |||||||||||| |||| |||||||    
T  27567727 cttattttgaaaactttttgcaaaaaa 27567701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 315 - 432
Target Start/End: Original strand, 34471222 - 34471339
Alignment:
Q  315 gttaaatgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaa 414  Q
    |||||||||||| |||| ||| |||||||||||  || |||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  34471222 gttaaatgtttttagtccctacaaaatcacaagcttttaagtttagtccctataaaattttaatggtaattttagtcctccaaaatattgtagtttgtaa 34471321  T
Q  415 gaatagtccgtattttga 432  Q
     ||||| || ||||||||    
T  34471322 taatagaccttattttga 34471339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 25067656 - 25067787
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| | |||||| ||||||| || | || |||||| ||  ||||||||||||||||||||||||| |||||||||||||  || ||||||| ||||    
T  25067656 atgtttttaatctctacaaaatcataaatttttaagtttggtttctataaaattttaatggtaattttaatcctccataatattatagtttgtaaaaata 25067755  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||| ||||||||||||  |||||||||||||    
T  25067756 gtccttattttgaaaactgtttacaaaaaatg 25067787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 357 - 449
Target Start/End: Original strand, 11297799 - 11297891
Alignment:
Q  357 ttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    ||||| ||||| |||||||||||||||||||||||||||| |||||  || ||||||| |||||||| |||||||||||| || ||| |||||    
T  11297799 ttagttcctatgaaattttaatggtaattttagtcctccaaaatattttagtttgtaaaaatagtccctattttgaaaactttatactaaaaa 11297891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 369 - 449
Target Start/End: Complemental strand, 13009480 - 13009400
Alignment:
Q  369 aaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||  |||||| | ||| ||||||||||||    
T  13009480 aaattttaatggtaattttagtcctctataatattgtagtttgtaagaatagtcgttattttaataactttttacaaaaaa 13009400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 333 - 449
Target Start/End: Complemental strand, 30851787 - 30851671
Alignment:
Q  333 ctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttga 432  Q
    ||||||||| |  ||| ||||| |||||  ||||||||||||||||||||||||||||  |||||||||| | | |||||||||||||||| |||||| |    
T  30851787 ctataaaattaagagttttcaactttagatcctataaaattttaatggtaattttagttttccataatattgaagtttgtaagaatagtccctattttaa 30851688  T
Q  433 aaaccttttacaaaaaa 449  Q
    |||  ||| ||||||||    
T  30851687 aaaattttgacaaaaaa 30851671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 20132058 - 20132189
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||||| ||| |  ||| || |||||||||  | ||||||||||||| ||||||||||||||  | |||||  || ||||||||||||    
T  20132058 atgtttttagtccctatataattatgagtttttaagtttagtttcaataaaattttaattgtaattttagtcctaaaaaatattataatttgtaagaata 20132157  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||  | |||||||||| ||||||||||||||    
T  20132158 gtctctgttttgaaaactttttacaaaaaatg 20132189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 435
Target Start/End: Complemental strand, 40751770 - 40751680
Alignment:
Q  345 aagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaa 435  Q
    |||| |||||||||||| ||||||||||||||||| ||||| | ||||| ||||||||  || |||||||||||| ||| |||||| ||||    
T  40751770 aagttttcaagtttagttcctataaaattttaatgctaattattgtccttcataatattttagtttgtaagaataatccctattttaaaaa 40751680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 12925250 - 12925347
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||| || ||  || ||| ||| |||| ||| |||||| ||||| |||||||||||||    
T  12925250 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttaaaactttttacaaaaaat 12925347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 452
Target Start/End: Original strand, 28098581 - 28098667
Alignment:
Q  365 tataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaac-cttttacaaaaaatga 452  Q
    |||||||||||||||||||||||||||||| ||||||  ||| ||||||  |||| ||| ||||||||||||  |||||||||||||||    
T  28098581 tataaaattttaatggtaattttagtcctcgataata--gtagtttgtagaaataatccatattttgaaaacttttttacaaaaaatga 28098667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 450
Target Start/End: Original strand, 43617069 - 43617199
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    |||||||||| || |||||||| | |||| || ||||| ||||  |||||||||||||||||||||| ||| || |||  ||| ||  |||| |||| ||    
T  43617069 atgttttaagcctttataaaattataagttttgaagttcagtctttataaaattttaatggtaatttcagttcttcatgttatggttgtttgcaagagta 43617168  T
Q  420 gtccgtattttgaaaaccttttacaaaaaat 450  Q
    |||| || ||| ||||| |||||||||||||    
T  43617169 gtccatactttaaaaactttttacaaaaaat 43617199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 320 - 392
Target Start/End: Original strand, 28555285 - 28555357
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcc 392  Q
    ||||||| |||||||| ||||||   | | || ||||||||||| ||||||||||||||||||||||||||||    
T  28555285 atgtttttagtctctacaaaatcgtgattttttaagtttagtccatataaaattttaatggtaattttagtcc 28555357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 441
Target Start/End: Original strand, 2316118 - 2316191
Alignment:
Q  367 taaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaacctttt 441  Q
    ||||||||||||| |||||||||||||||||||||| | | ||| |||||||||| | |||||| ||||| ||||    
T  2316118 taaaattttaatgataattttagtcctccataatattgcaattt-taagaatagttcctattttaaaaacatttt 2316191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 402
Target Start/End: Original strand, 21367210 - 21367256
Alignment:
Q  356 tttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    |||||||  |||||||||||||||||||||||| |||||||||||||    
T  21367210 tttagtctttataaaattttaatggtaattttaatcctccataatat 21367256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 450
Target Start/End: Complemental strand, 28565169 - 28565075
Alignment:
Q  356 tttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    |||||| | ||||||||||||||  |||||||||||||  ||||||  ||| ||| ||| |||||||  ||||||||||||  ||||||||||||    
T  28565169 tttagttcttataaaattttaataataattttagtcctttataataatgtagtttataaaaatagtctctattttgaaaactctttacaaaaaat 28565075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 41232860 - 41232915
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcct 393  Q
    |||||| |||| || ||||||||||  ||| |||||||||||||||||||||||||    
T  41232860 aaatcataagtttttaagtttagtcgatattaaattttaatggtaattttagtcct 41232915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 402
Target Start/End: Complemental strand, 8894590 - 8894549
Alignment:
Q  361 tccctataaaattttaatggtaattttagtcctccataatat 402  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||    
T  8894590 tccctattaaattttaatgataattttagtcctccgtaatat 8894549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 414
Target Start/End: Complemental strand, 39596863 - 39596814
Alignment:
Q  365 tataaaattttaatggtaattttagtcctccataatatcgtactttgtaa 414  Q
    |||||| |||||||| |||||||||||||||| ||||| ||| |||||||    
T  39596863 tataaatttttaatgataattttagtcctccaaaatattgtagtttgtaa 39596814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 23145231 - 23145199
Alignment:
Q  138 attgatagggtaacagggagttgtaagcttaat 170  Q
    ||||||| |||||||||||||||||||||||||    
T  23145231 attgatatggtaacagggagttgtaagcttaat 23145199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 320 - 452
Target Start/End: Original strand, 40390894 - 40391025
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||  ||| |||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||    
T  40390894 atgtttttagtccctacaaaatcatgagttttcaagtttagttcctataaaattttaatgataattttagtcctccat-atattgtagtttgtaagaata 40390992  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatga 452  Q
    |||  |||||| ||||| |||||||||||||||    
T  40390993 gtctctatttttaaaacattttacaaaaaatga 40391025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 323 - 451
Target Start/End: Original strand, 33609950 - 33610079
Alignment:
Q  323 ttttaagtctctataaaatca-caagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagt 421  Q
    |||| ||||| || ||||||| ||||| || ||||||||| | |||||||||||||||||||||||| |  | |||||||| ||| ||| ||||||||||    
T  33609950 tttttagtctatacaaaatcatcaagtttttaagtttagttcttataaaattttaatggtaattttaatttttcataatattgtagtttataagaatagt 33610049  T
Q  422 ccgtattttgaaaaccttttacaaaaaatg 451  Q
    || |||||||||||| |||| |||||||||    
T  33610050 ccttattttgaaaactttttgcaaaaaatg 33610079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 323 - 448
Target Start/End: Original strand, 15025785 - 15025910
Alignment:
Q  323 ttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtc 422  Q
    |||| |||| ||| |||||||| |||  | ||||||||| | |||||||||||||||||||||||| ||||| | |||||  || ||||| | |||||||    
T  15025785 tttttagtccctacaaaatcacgagttattaagtttagttcttataaaattttaatggtaattttaatcctctaaaatattatagtttgtgataatagtc 15025884  T
Q  423 cgtattttgaaaaccttttacaaaaa 448  Q
    | |||||||||||| |||||||||||    
T  15025885 cctattttgaaaactttttacaaaaa 15025910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 337 - 449
Target Start/End: Complemental strand, 31050122 - 31050010
Alignment:
Q  337 aaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaac 436  Q
    ||||||||| || || |||||||| |||||||||||| |||| |||| |||||| ||| ||||||| |||  ||||||  ||||||  ||||||||||||    
T  31050122 aaaatcacatgtttttaagtttagcccctataaaattataattgtaaatttagttctcgataatattgtagcttgtaaagatagtcattattttgaaaac 31050023  T
Q  437 cttttacaaaaaa 449  Q
    |||||||||||||    
T  31050022 cttttacaaaaaa 31050010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 38377812 - 38377883
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtc 391  Q
    ||||||| ||||  || |||||||||| | || |||||||||||||||||||||||||||||||||||||||    
T  38377812 atgtttttagtccttacaaaatcacaaatttttaagtttagtccctataaaattttaatggtaattttagtc 38377883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 436
Target Start/End: Complemental strand, 22593430 - 22593332
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaac 436  Q
    ||||||||||| ||||||||||||  |||| ||||||||||||| ||||||||| || | |||||| || ||||||| |||||||| | |||| |||||    
T  22593430 aaatcacaagttttcaagtttagtttctattaaattttaatggtgattttagtcttctacaatatcatagtttgtaaaaatagtcccttttttaaaaac 22593332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 364 - 421
Target Start/End: Original strand, 47472233 - 47472290
Alignment:
Q  364 ctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagt 421  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||    
T  47472233 ctataaaattttaatggtaattttagtccttcataatattgtaatttataagaatagt 47472290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 337 - 421
Target Start/End: Original strand, 10573973 - 10574057
Alignment:
Q  337 aaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagt 421  Q
    |||||||||||| ||||| ||||||  |||||||| | |||||| ||||||| ||||||||||||| ||| ||||||| ||||||    
T  10573973 aaaatcacaagttttcaaatttagtttctataaaaatataatggcaattttaatcctccataatattgtagtttgtaaaaatagt 10574057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 15882295 - 15882219
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctcca 396  Q
    ||||||| |||| ||| |||||||  ||| || ||| ||||||||||| ||||||||||||||||||||||||||||    
T  15882295 atgtttttagtccctacaaaatcatgagtttttaagcttagtccctatgaaattttaatggtaattttagtcctcca 15882219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 447
Target Start/End: Complemental strand, 6449817 - 6449707
Alignment:
Q  337 aaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaac 436  Q
    |||||||| ||| |||||||||| | || |||||||||||||| ||||||||||  |  ||||||  ||| ||||||| |||||||| |||||| |||||    
T  6449817 aaaatcacgagttttcaagtttaatgcccataaaattttaatgataattttagttttttataataatgtagtttgtaaaaatagtccctattttaaaaac 6449718  T
Q  437 cttttacaaaa 447  Q
     |||| |||||    
T  6449717 tttttgcaaaa 6449707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 402
Target Start/End: Complemental strand, 33894532 - 33894467
Alignment:
Q  337 aaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    |||||||||| | |||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||    
T  33894532 aaaatcacaaattttcaagtttaatctgtataaaattttaatgttaattttagtcttccataatat 33894467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 364 - 441
Target Start/End: Original strand, 6156075 - 6156152
Alignment:
Q  364 ctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaacctttt 441  Q
    ||||||||||||||||||  |||||||| |||||||||| ||| ||| ||| |||||| | |||||||| ||| ||||    
T  6156075 ctataaaattttaatggtttttttagtcttccataatattgtagtttataaaaatagttcatattttgataacttttt 6156152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 14806131 - 14806228
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||| || ||  || ||| ||| |||| |||  ||||| | ||| |||||||||||||    
T  14806131 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatcctcatttttataactttttacaaaaaat 14806228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 312
Target Start/End: Original strand, 29291241 - 29291309
Alignment:
Q  244 caatattgcttttaatcacacatggcgtgagagaaacaaatgtgttgattggttggctaattttagttt 312  Q
    |||||||| | |||| | ||||||| ||||| |||||| |||| |||||||||||| ||||||||||||    
T  29291241 caatattgttgttaaacgcacatggtgtgagggaaacatatgtattgattggttggttaattttagttt 29291309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 402
Target Start/End: Original strand, 30801956 - 30802024
Alignment:
Q  333 ctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    ||||||||| |||||| || ||||||| ||| ||||||||||||||| | ||||||||| | ||||||||    
T  30801956 ctataaaattacaagtttttaagtttaatcc-tataaaattttaatgattattttagtcattcataatat 30802024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 7117000 - 7117052
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    |||||||||||| || |||| ||||||||| |||| ||||||||||| |||||    
T  7117000 ttcaagtttagttccaataacattttaatgttaatattagtcctccaaaatat 7117052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 337 - 449
Target Start/End: Original strand, 20985949 - 20986061
Alignment:
Q  337 aaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaac 436  Q
    |||||||| ||| || || |||||||||||||||||||||||||||||||||||| || | ||||| ||| |||| ||||||||||| ||||||||||||    
T  20985949 aaaatcacgagtttttaaatttagtccctataaaattttaatggtaattttagtcttctaaaatattgtagtttgcaagaatagtccctattttgaaaac 20986048  T
Q  437 cttttacaaaaaa 449  Q
     ||||||||||||    
T  20986049 tttttacaaaaaa 20986061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 320 - 452
Target Start/End: Complemental strand, 33753123 - 33752992
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||||||| || ||||||||||| ||||||||||||||||| ||||||| |||||||||||| ||| |||||||||||     
T  33753123 atgtttttagtc-ctacaaaatcacaagttttaaagtttagtccgtataaaattttaatggtgattttagccctccataatattgtagtttgtaagaatg 33753025  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatga 452  Q
    |||  ||||||||||   | |||||||||||||    
T  33753024 gtcactattttgaaactttattacaaaaaatga 33752992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 449
Target Start/End: Original strand, 13392847 - 13392944
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaac-cttttacaaaaaa 449  Q
    |||||||||||||||||| |||||||| ||||||||||| |||| ||||| ||| ||||||| |||||||| |||||| |||||  ||||||||||||    
T  13392847 aagtttagtccctataaagttttaatgttaattttagtcatccaaaatattgtagtttgtaaaaatagtccctattttaaaaacttttttacaaaaaa 13392944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 423
Target Start/End: Original strand, 1444985 - 1445070
Alignment:
Q  337 aaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtcc 423  Q
    |||||||| ||| ||||||||||||| |||||||||||| | | |||||||| ||||||||||||| ||| ||| ||||||||||||    
T  1444985 aaaatcacgagttttcaagtttagtctctataaaatttttaag-taattttaatcctccataatattgtagtttttaagaatagtcc 1445070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 16545540 - 16545443
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaatg 451  Q
    ||||||| ||||||||||||||||||| ||| |||| ||||||| ||||| ||| ||| ||| ||| |||| |||||||||||| || |||||||||||    
T  16545540 aagtttaatccctataaaattttaatgataaatttactcctccaaaatattgtagttt-taaaaatggtccctattttgaaaactttatacaaaaaatg 16545443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 3891483 - 3891548
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaat 418  Q
    |||||||||||||||||||||||| ||||| |||||||||||| |||||| ||| |||| ||||||    
T  3891483 aagtttagtccctataaaattttattggtagttttagtcctccgtaatattgtaatttgcaagaat 3891548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 350 - 402
Target Start/End: Complemental strand, 37471066 - 37471014
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    |||||||||||||||||||||| |||||||||  |||||||||||||||||||    
T  37471066 ttcaagtttagtccctataaaaatttaatggtgcttttagtcctccataatat 37471014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 449
Target Start/End: Complemental strand, 50919411 - 50919316
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||||||||||||||||||||||||||||||||||||| || ||| |||  ||| ||||||| |||| ||  |||||| ||||| ||||| ||||||    
T  50919411 aagtttagtccctataaaattttaatggtaattttagt-cttcatgataatgtaatttgtaaaaataatcgatattttaaaaactttttagaaaaaa 50919316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 435
Target Start/End: Original strand, 29102871 - 29102956
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaa 435  Q
    ||||||||||||||||||| ||||| |||| |||||||||||||||| ||||| |||  ||  || |||||||| |||||| ||||    
T  29102871 ttcaagtttagtccctatacaatttaaatgataattttagtcctccaaaatattgtagctttcaaaaatagtccctattttaaaaa 29102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 14941151 - 14941096
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcct 393  Q
    ||||||||||| || ||||||||||  |||||||||||||||||||||||| ||||    
T  14941151 aaatcacaagtttttaagtttagtcgatataaaattttaatggtaattttaatcct 14941096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 14951158 - 14951103
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcct 393  Q
    ||||||||||| || ||||||||||  |||||||||||||||||||||||| ||||    
T  14951158 aaatcacaagtttttaagtttagtcgatataaaattttaatggtaattttaatcct 14951103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 14955399 - 14955344
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcct 393  Q
    ||||||||||| || ||||||||||  |||||||||||||||||||||||| ||||    
T  14955399 aaatcacaagtttttaagtttagtcgatataaaattttaatggtaattttaatcct 14955344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 414
Target Start/End: Complemental strand, 29307743 - 29307657
Alignment:
Q  328 agtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaa 414  Q
    |||| ||| |||||||  ||| || ||||||||||||||||| |||||||| |||||||||||||| || ||||  ||| |||||||    
T  29307743 agtccctacaaaatcatgagtttttaagtttagtccctataagattttaattgtaattttagtccttcaaaatactgtagtttgtaa 29307657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 402
Target Start/End: Original strand, 15800836 - 15800895
Alignment:
Q  343 acaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    |||||| || ||||||| ||||||||||||||||||| | ||||||||| | ||||||||    
T  15800836 acaagtttttaagtttaatccctataaaattttaatgattattttagtcattcataatat 15800895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 402
Target Start/End: Complemental strand, 50773734 - 50773681
Alignment:
Q  345 aagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    |||| ||||||||||||||||||    ||||||| |||||||||||||| ||||||||    
T  50773734 aagtcttcaagtttagtccctat----ttttaattgtaattttagtccttcataatat 50773681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 320 - 435
Target Start/End: Original strand, 20336785 - 20336900
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||  ||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| | | |||||||  |||    
T  20336785 atgtttttagtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggtaattttagtcctccataatattgaattttgtaattata 20336884  T
Q  420 gtccgtattttgaaaa 435  Q
    |||| |||||||||||    
T  20336885 gtccctattttgaaaa 20336900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 328 - 450
Target Start/End: Original strand, 20314900 - 20315022
Alignment:
Q  328 agtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtat 427  Q
    |||| ||| |||||||  ||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||| | | ||||||| |||||||  |||    
T  20314900 agtccctacaaaatcaagagttttcaactttagtccttataaaattttaatggcaattttagtcctccataatattgaattttgtaataatagtctctat 20314999  T
Q  428 tttgaaaaccttttacaaaaaat 450  Q
    ||||||||  |||||||||||||    
T  20315000 tttgaaaattttttacaaaaaat 20315022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 320 - 430
Target Start/End: Original strand, 39340775 - 39340885
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||| ||| || |||||||||||||||||| |||||||||||||||||||| |||| ||||| ||| ||||||| ||||    
T  39340775 atgttttgagtccctacaaaatcactagtttttaagtttagtccctataaagttttaatggtaattttagtcatccaaaatattgtagtttgtaaaaata 39340874  T
Q  420 gtccgtatttt 430  Q
    |||| ||||||    
T  39340875 gtccctatttt 39340885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 320 - 451
Target Start/End: Original strand, 34359335 - 34359466
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| ||||  || |||||||  ||| || ||||||||||| |||||||||||||||||||||||| ||||||| |||||  || ||||||| |||     
T  34359335 atgtttttagtccttacaaaatcatgagtttttaagtttagtccatataaaattttaatggtaattttattcctccaaaatattatagtttgtaaaaatg 34359434  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||| | |||||||||| ||||||||||||||    
T  34359435 gtccctgttttgaaaactttttacaaaaaatg 34359466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 450
Target Start/End: Complemental strand, 28769625 - 28769540
Alignment:
Q  365 tataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    ||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||  |||||| ||||| ||||||| |||||    
T  28769625 tataaaattttaatggtgatttttgtcctccataatattgtagtttgtaagaatagtctttattttaaaaactttttacagaaaat 28769540  T

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Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 451
Target Start/End: Complemental strand, 44447016 - 44446885
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||||| ||| |  ||| || ||||||| |||| ||||||||||||| ||||||||||||||  | |||||  || ||||||||||||    
T  44447016 atgtttttagtccctatataattatgagtttttaagtttaatcccaataaaattttaattgtaattttagtcctaaaaaatattatagtttgtaagaata 44446917  T
Q  420 gtccgtattttgaaaaccttttacaaaaaatg 451  Q
    |||  | |||||||||| ||||||||||||||    
T  44446916 gtctctgttttgaaaactttttacaaaaaatg 44446885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 344 - 402
Target Start/End: Original strand, 13899492 - 13899550
Alignment:
Q  344 caagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13899492 caagtcttgaagtttagttcctataaaattttaatggtaattttagtcctccataatat 13899550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 16876437 - 16876503
Alignment:
Q  369 aaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaa 435  Q
    |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||| ||||    
T  16876437 aaattttaattgtaattttagtcctccataatattgtagtttgtaagaatagtccctattttaaaaa 16876503  T

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Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 435
Target Start/End: Complemental strand, 22853504 - 22853421
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaa 435  Q
    ||||||||||||| |||  ||||||||||||||||||||||||||||||||||  || ||||||| |||||||| |||||| ||||    
T  22853504 ttcaagtttagtctcta--aaattttaatggtaattttagtcctccataatattttaatttgtaaaaatagtccttattttaaaaa 22853421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 312 - 394
Target Start/End: Original strand, 52423004 - 52423086
Alignment:
Q  312 tgggttaaatgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctc 394  Q
    |||||||||| | || |||| ||| |||||||| ||| ||||||||||||||||||||| ||| |||||||||||||||||||    
T  52423004 tgggttaaatatgtttagtccctacaaaatcacgagttttcaagtttagtccctataaagtttcaatggtaattttagtcctc 52423086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 323 - 451
Target Start/End: Complemental strand, 50334796 - 50334666
Alignment:
Q  323 ttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtc 422  Q
    |||| ||||||||||||||||  ||| ||  | |||| ||||||||||||||||||| ||||||||||| |||| ||||| ||| ||||||| | ||||     
T  50334796 tttttagtctctataaaatcatgagttttttactttaatccctataaaattttaatgataattttagtcttccaaaatattgtagtttgtaaaattagtt 50334697  T
Q  423 cgtattttgaaaac--cttttacaaaaaatg 451  Q
    | ||||||||| ||   ||||||||||||||    
T  50334696 cctattttgaatactttttttacaaaaaatg 50334666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 449
Target Start/End: Complemental strand, 38673412 - 38673319
Alignment:
Q  356 tttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||||||||||||||||||||||| |||||||| ||  ||||||||| ||| |||||||||||| |   | |||  ||||||||||||||||||    
T  38673412 tttagtccctataaaattttaatgataattttaatcaaccataatattgtaatttgtaagaatatttactgtttgtaaaaccttttacaaaaaa 38673319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 351 - 451
Target Start/End: Original strand, 45743765 - 45743865
Alignment:
Q  351 tcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    |||||||| || | |||||||||||||| |||| |||||||||  ||| ||  ||| ||||||||||| |||| |||||| ||||| |||||||||||||    
T  45743765 tcaagtttggttcttataaaattttaatagtaactttagtcctttatagtagtgtagtttgtaagaatggtccctattttaaaaactttttacaaaaaat 45743864  T
Q  451 g 451  Q
    |    
T  45743865 g 45743865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 449
Target Start/End: Original strand, 17268847 - 17268964
Alignment:
Q  332 tctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttg 431  Q
    |||||||||| || ||| || |||| |||||| |||| |||||||||| ||||||||||| || ||| ||| ||| ||||||| |||||||  ||||||     
T  17268847 tctataaaattacgagtgtttaagtatagtccatatacaattttaatgataattttagtcttctatattattgtagtttgtaaaaatagtctatatttta 17268946  T
Q  432 aaaaccttttacaaaaaa 449  Q
     |||| ||||| ||||||    
T  17268947 taaacattttataaaaaa 17268964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 16607703 - 16607606
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||| || ||  || ||| ||| |||| ||| |||||| | ||| |||| ||||||||    
T  16607703 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttagaacttttttcaaaaaat 16607606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 418
Target Start/End: Complemental strand, 9766098 - 9766048
Alignment:
Q  368 aaaattttaatggtaattttagtcctccataatatcgtactttgtaagaat 418  Q
    |||||||||||| |||||||||||||| | ||||| ||| |||||||||||    
T  9766098 aaaattttaatgataattttagtcctctacaatattgtagtttgtaagaat 9766048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 337 - 377
Target Start/End: Original strand, 16876101 - 16876141
Alignment:
Q  337 aaaatcacaagtattcaagtttagtccctataaaattttaa 377  Q
    |||||||| | | ||||||||||||||||||||||||||||    
T  16876101 aaaatcacgatttttcaagtttagtccctataaaattttaa 16876141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 402
Target Start/End: Complemental strand, 18085424 - 18085360
Alignment:
Q  338 aaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    |||| |||||| || || |||| ||||||||||||||||||| | ||||||||| | ||||||||    
T  18085424 aaattacaagtttttaaatttaatccctataaaattttaatgattattttagtcattcataatat 18085360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 402
Target Start/End: Original strand, 28997853 - 28997905
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatat 402  Q
    ||||| ||||| |||||||||| |||||| ||| ||||||| |||||||||||    
T  28997853 ttcaaatttagaccctataaaactttaattgtagttttagttctccataatat 28997905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 50358539 - 50358479
Alignment:
Q  330 tctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagt 390  Q
    |||||| |||||||||||| ||| |||||| |   ||||||||||||||| ||||||||||    
T  50358539 tctctacaaaatcacaagtcttcgagtttaatttatataaaattttaatgttaattttagt 50358479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 350 - 452
Target Start/End: Complemental strand, 152304 - 152202
Alignment:
Q  350 ttcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||||||||||||  ||||||||||||||||||||||||||||| |||||||| |||  ||||||||||||||| |||||| ||||| | || |||||||    
T  152304 ttcaagtttagtctttataaaattttaatggtaattttagtccttcataatattgtagattgtaagaatagtccctatttttaaaacttcttgcaaaaaa 152205  T
Q  450 tga 452  Q
    |||    
T  152204 tga 152202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 370 - 449
Target Start/End: Complemental strand, 48540 - 48461
Alignment:
Q  370 aattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||||||||||||||||||||||||||||| || ||| ||| |||||| ||||| | |||||||||| ||||||||||||    
T  48540 aattttaatggtaattttagtcctccataaaattgtagtttataagaacagtccctcttttgaaaactttttacaaaaaa 48461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 320 - 449
Target Start/End: Complemental strand, 5629 - 5500
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||  ||| || ||| || |||||||| ||||||||||||||  |||||||||||| |||||  || ||||||| | ||    
T  5629 atgtttttagtccctacaaaatcatgagtttttaagcttggtccctatgaaattttaatggtatatttagtcctccaaaatattttagtttgtaaaagta 5530  T
Q  420 gtccgtattttgaaaaccttttacaaaaaa 449  Q
    |||| |||||||||||| || |||||||||    
T  5529 gtccctattttgaaaactttatacaaaaaa 5500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 432
Target Start/End: Original strand, 8604 - 8716
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaata 419  Q
    ||||||| |||| ||| |||||||  ||| || ||| |||||||| || |||||||||||||||||||||||||||| |||||   | ||||| | ||||    
T  8604 atgtttttagtccctaaaaaatcatgagtttttaagcttagtcccaatgaaattttaatggtaattttagtcctccaaaatatttaagtttgttaaaata 8703  T
Q  420 gtccgtattttga 432  Q
    |||| ||||||||    
T  8704 gtccctattttga 8716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 394
Target Start/End: Original strand, 3226 - 3300
Alignment:
Q  320 atgttttaagtctctataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtcctc 394  Q
    ||||||| |||| ||| |||||||  ||| || ||| ||| ||||||| ||||||||||||||||||||||||||    
T  3226 atgtttttagtccctacaaaatcatgagtttttaagcttaatccctatgaaattttaatggtaattttagtcctc 3300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1911 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold1911
Description:

Target: scaffold1911; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 432
Target Start/End: Original strand, 22 - 97
Alignment:
Q  357 ttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttga 432  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||   | ||||| | |||||||| ||||||||    
T  22 ttagtccctatgaaattttaatggtaattttagtcctccaaaatatttaagtttgttaaaatagtccctattttga 97  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 363203 - 363106
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||| || ||  || ||| ||| |||| ||| |||||| | ||| |||||||||||||    
T  363203 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatccttatttttagaactttttacaaaaaat 363106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 421
Target Start/End: Complemental strand, 19855 - 19789
Alignment:
Q  355 gtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagt 421  Q
    ||||||||||||||||||||||| ||||||||||||| || | ||||| ||| || |||| ||||||    
T  19855 gtttagtccctataaaattttaacggtaattttagtcgtcgaaaatattgtagttagtaaaaatagt 19789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 450
Target Start/End: Complemental strand, 33596 - 33499
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaat 450  Q
    ||||||||| ||||||||||||||||| |||||||||| ||||| || ||  || ||| ||| |||| |||  ||||| | ||| |||||||||||||    
T  33596 aagtttagttcctataaaattttaatgataattttagttctccaaaaaattataatttttaataataatcctcatttttataactttttacaaaaaat 33499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 451
Target Start/End: Complemental strand, 253876 - 253779
Alignment:
Q  353 aagtttagtccctataaaattttaatggtaattttagtcctccataatatcgtactttgtaagaatagtccgtattttgaaaaccttttacaaaaaatg 451  Q
    ||||||||| | |||||||||||||| ||||||||||||||  | |||||  || |||||||| ||||||  |||||| |||   ||||||||||||||    
T  253876 aagtttagttcatataaaattttaatagtaattttagtcctttaaaatattatagtttgtaaggatagtctctatttt-aaacttttttacaaaaaatg 253779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 3875 - 3931
Alignment:
Q  335 ataaaatcacaagtattcaagtttagtccctataaaattttaatggtaattttagtc 391  Q
    ||||||| |||||| || |||||||||| || |||| |||||||| |||||||||||    
T  3875 ataaaattacaagtttttaagtttagtctctctaaacttttaatgataattttagtc 3931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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