View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14664_low_18 (Length: 439)
Name: NF14664_low_18
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 423
Target Start/End: Complemental strand, 10486117 - 10485714
Alignment:
| Q |
19 |
tagatccgcacgttttgcccctaaatttgcaataccattttcacattttcaagcctaatggagagttttgaataaatgcttaattaattgttatttaaat |
118 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10486117 |
tagatctgcacgttttgcccctaaatttgcaataccattttcacattttcaagcctaatggagagttttgaataaatgcataattaattgttatttaaat |
10486018 |
T |
|
| Q |
119 |
tatacctttgaaagtttatttaaattaattgttttcatgttggagtaaacaaaaagaatttatttaagtaaaatgaaaatgaacatatatatacatatgt |
218 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10486017 |
tatacctttgaaaggttatttaaattaattgttttcatgttggagtaaacaagaagaatttatttaagtaaaatgaaaatgaatatatatatacatatgt |
10485918 |
T |
|
| Q |
219 |
tctccaaaacacttaatttttcatatatnnnnnnntttaagcgagttgggtgctggaaactacttagagttttagatcgatctctatgcccttttgatct |
318 |
Q |
| |
|
||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
10485917 |
tctcccaaacacttaatattttatatataaaaaaatttaagcgagttgggtgctggaaactacttagag-tttagattgatctctatgcccttttgatct |
10485819 |
T |
|
| Q |
319 |
atacttataagtttagtaatcaacaaaatccttatatcgacggtgtaaattgaacatgtactcttgtaagatatcaataaactttttacctattagacca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10485818 |
atacttataagtttagtaatcaacaaaattcttatatcgacggtataaattgaacatgtactcttgtaagatatcaataaactttttacctattagacca |
10485719 |
T |
|
| Q |
419 |
caaac |
423 |
Q |
| |
|
||||| |
|
|
| T |
10485718 |
caaac |
10485714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University