View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_19 (Length: 434)
Name: NF14664_low_19
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 113 - 431
Target Start/End: Original strand, 4488186 - 4488504
Alignment:
| Q |
113 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag |
212 |
Q |
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| T |
4488186 |
tatttgaggaagaatccagtttgattttagcactattggtgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag |
4488285 |
T |
|
| Q |
213 |
taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgatt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4488286 |
taccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcatcacttcctctgccactgcagatgccacatcatctgatt |
4488385 |
T |
|
| Q |
313 |
caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4488386 |
caatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaacaat |
4488485 |
T |
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| Q |
413 |
atcttacctttctctgctc |
431 |
Q |
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||||||||||||||||||| |
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| T |
4488486 |
atcttacctttctctgctc |
4488504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 211 - 431
Target Start/End: Original strand, 1409606 - 1409826
Alignment:
| Q |
211 |
agtaccttttaaataagccacccattgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctga |
310 |
Q |
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| T |
1409606 |
agtaccttttaaataagccaccggttgaagctccaacgaccaatttcgttacagcatacttggttacttcctctgccaccgcagatgccacatcatctga |
1409705 |
T |
|
| Q |
311 |
ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatattcatgaagaaca |
410 |
Q |
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| T |
1409706 |
ttcaatcactacaacttctacatgcacctgtttcaacaatagtataagaatgcagttcctatagtgcactatttgttcaaattaatcttcatgaagaaca |
1409805 |
T |
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| Q |
411 |
atatcttacctttctctgctc |
431 |
Q |
| |
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||||||||||||||||||||| |
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| T |
1409806 |
atatcttacctttctctgctc |
1409826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 1409549 - 1409608
Alignment:
| Q |
113 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt |
172 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
1409549 |
tatttgaggaagaatgcagtttgatcttagaactattggtgataataaatctttattagt |
1409608 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 1402810 - 1402874
Alignment:
| Q |
275 |
tacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgcacct |
339 |
Q |
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| T |
1402810 |
tacttcctctgctactgcagttgctacatcatctgattcaatcactactacatctacatgcacct |
1402874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 19023787 - 19023911
Alignment:
| Q |
113 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagtcaaggtaaatgctaaaatgattttgctgtcattatagaag |
212 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
19023787 |
tatttgaggatgaatccagtttgatcttggcactattggtgataataaatcattattagtcaaggtagatgctaaaatgattttgctgtcattatagaag |
19023886 |
T |
|
| Q |
213 |
taccttttaaataagccacccattg |
237 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
19023887 |
taccttttaaataagccacccattg |
19023911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 335
Target Start/End: Original strand, 11955361 - 11955434
Alignment:
| Q |
262 |
tagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc |
335 |
Q |
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|||||| ||| | |||||||||||| | ||||| ||| ||||||||| |||||||||||| || ||||||||| |
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| T |
11955361 |
tagcatccttaactacttcctctgctattgcagttgctacatcatcttattcaatcactaaaatatctacatgc |
11955434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 14244855 - 14244914
Alignment:
| Q |
113 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
14244855 |
tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt |
14244914 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 6355405 - 6355464
Alignment:
| Q |
113 |
tatttgaggaagaatccagtttgatcttagcactattgatgataataaatctttattagt |
172 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6355405 |
tatttgaggaagaatccagtttgatcttagcactattggtgataataaatctttattagt |
6355464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 335
Target Start/End: Complemental strand, 40682322 - 40682223
Alignment:
| Q |
236 |
tgaagctccaacgaccaatttcgttatagcatacttcattacttcctctgccactgcagatgccacatcatctgattcaatcactacaacttctacatgc |
335 |
Q |
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||||||||||| ||| | ||| |||||||||| ||| |||||||||||| | |||| ||| |||||||||||||||||||||| ||| ||||||||| |
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| T |
40682322 |
tgaagctccaaggacaagtttggttatagcatccttagctacttcctctgctattgcaattgctacatcatctgattcaatcactaaaacatctacatgc |
40682223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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