View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14664_low_2 (Length: 855)

Name: NF14664_low_2
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14664_low_2
NF14664_low_2
[»] chr4 (4 HSPs)
chr4 (18-849)||(25605556-25606388)
chr4 (707-757)||(40613275-40613325)
chr4 (697-758)||(22523774-22523835)
chr4 (686-740)||(37636119-37636173)
[»] chr5 (2 HSPs)
chr5 (685-747)||(1084065-1084127)
chr5 (697-738)||(37968971-37969012)
[»] chr3 (4 HSPs)
chr3 (683-740)||(24158449-24158506)
chr3 (683-740)||(22667483-22667540)
chr3 (683-740)||(22724122-22724179)
chr3 (699-740)||(44237513-44237554)
[»] chr2 (3 HSPs)
chr2 (685-740)||(40943995-40944050)
chr2 (697-747)||(37419593-37419643)
chr2 (683-740)||(5759508-5759565)
[»] chr1 (1 HSPs)
chr1 (697-740)||(50998638-50998681)
[»] chr8 (2 HSPs)
chr8 (685-739)||(8535989-8536043)
chr8 (697-738)||(25881350-25881391)
[»] chr7 (2 HSPs)
chr7 (697-755)||(24048634-24048692)
chr7 (708-754)||(41040270-41040316)
[»] chr6 (2 HSPs)
chr6 (708-754)||(7351590-7351636)
chr6 (698-747)||(29249488-29249537)


Alignment Details
Target: chr4 (Bit Score: 654; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 654; E-Value: 0
Query Start/End: Original strand, 18 - 849
Target Start/End: Original strand, 25605556 - 25606388
Alignment:
Q  18 atatttgccctgataaaaccccaaaattagtagagaataaacatccaaaagtttgccaaaggatatttggcagcaggactgttaaactttgaaatcataa 117  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  25605556 atatgtgccctgataaaaccccaaaataagtagagaataaacatccaaaagtttgcgaaagaatatttggcagcaggactgttaaactttgaaatcataa 25605655  T
Q  118 caaagaaacaactcttcaactggaaatatgcataaagtnnnnnnntcaaagattttttctaactgatgccgaggaatatagtgtaccaagctggtatctg 217  Q
    ||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25605656 caaagaaacaactcttcaaatggaaatatgcataaagtaaaaaaatcaaagattttttctaactgatgccgaggaatatagtgtaccaagctggtatatg 25605755  T
Q  218 ccttactcaatgacaaaaatgtcttaaaattctttcttgctaacatagggaacatttgattagctagtagacagtctcaaattnnnnnnnngtgttatca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||    
T  25605756 ccttactcaatgacaaaaatgtcttaaaattctttcttgctaacatagggaacatttgattagctagtagacagtctcaaattaaaaaaaagtgttatca 25605855  T
Q  318 attagactcaatattttagttctaaacccaccaaatctattagatacaactattatatctgatgtaattcctaattataataccattccctaagacttac 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25605856 attagactcaatattttagttctaaacccaccaaatctattagatacaactattatatctgatgtaattcctaattataataccattccctaagacttac 25605955  T
Q  418 cttatataatttaccagaacacatgattatggagggaacaat-nnnnnnnnngtataataccaagtaaaataccaaacatataattgtcatatcaaactg 516  Q
    ||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||| |||||||||||||    
T  25605956 cttatataatttaccagaacacatgattatggagggaacaataaaaaaaaaagtataataccaagtaaaataccaaacatataattatcatatcaaactg 25606055  T
Q  517 agaccctgttcggataaaaatcttgattaacttataagtacgtttatgtataagcgatttctacaacaaagat-aaaaaagccgcatcannnnnnnnnnn 615  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||               
T  25606056 agaccctgttcggataaacatcttgattaacttctaagtacgtttatgtataagcgatttctacaacaaagataaaaaaagccgcatca-ttttttcttt 25606154  T
Q  616 nnggaatacaagtcacatcgtttgtgagagcctatgaaaataagttgaaagtcgtgttataagttgctccataaactttcgcaaacagttttacaagtac 715  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25606155 ttggaatacaagtcacatcgtttgtgagagcctatgaaaataagttgaaagtcgtgttataagttgctccataaactttcgcaaacagttttacaagtac 25606254  T
Q  716 ttatatcagtagataaactcaaatacgtcaattgaaacaaaccatgagtattgtcaagaacagctcctgtatacacgaagcaatgaatttaactcattaa 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25606255 ttatatcagtagataaactcaaatacgtcaattgaaacaaaccatgagtattgtcaagaacagctcctgtatacacgaagcaatgaatttaactcattaa 25606354  T
Q  816 gacaaaaactgcataccgagtctgtgctgctcct 849  Q
     |||||||||| |||||||||||| |||||||||    
T  25606355 tacaaaaactgaataccgagtctgagctgctcct 25606388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 707 - 757
Target Start/End: Original strand, 40613275 - 40613325
Alignment:
Q  707 tacaagtacttatatcagtagataaactcaaatacgtcaattgaaacaaac 757  Q
    ||||||| |||| ||| ||||||||||||||||| ||||||||||||||||    
T  40613275 tacaagtgcttaaatcggtagataaactcaaataagtcaattgaaacaaac 40613325  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 758
Target Start/End: Original strand, 22523774 - 22523835
Alignment:
Q  697 caaacagttttacaagtacttatatcagtagataaactcaaatacgtcaattgaaacaaacc 758  Q
    |||||||| | |||||||||||| ||||||||||||||| ||||  ||||| ||||||||||    
T  22523774 caaacagtctcacaagtacttatgtcagtagataaactcgaataaatcaatagaaacaaacc 22523835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 686 - 740
Target Start/End: Complemental strand, 37636173 - 37636119
Alignment:
Q  686 ataaactttcgcaaacagttttacaagtacttatatcagtagataaactcaaata 740  Q
    ||||||| || |||||||||||||| || ||||| | ||||||||||||||||||    
T  37636173 ataaactctcccaaacagttttacaggtgcttatgttagtagataaactcaaata 37636119  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 685 - 747
Target Start/End: Complemental strand, 1084127 - 1084065
Alignment:
Q  685 cataaactttcgcaaacagttttacaagtacttatatcagtagataaactcaaatacgtcaat 747  Q
    |||||||| || |||||||||| |||||| ||||| |||||| ||||||||||||| ||||||    
T  1084127 cataaactctctcaaacagtttcacaagtgcttatgtcagtaaataaactcaaataagtcaat 1084065  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 738
Target Start/End: Original strand, 37968971 - 37969012
Alignment:
Q  697 caaacagttttacaagtacttatatcagtagataaactcaaa 738  Q
    |||||||||| |||||||||||| ||||||||||| ||||||    
T  37968971 caaacagtttcacaagtacttatgtcagtagataagctcaaa 37969012  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 683 - 740
Target Start/End: Complemental strand, 24158506 - 24158449
Alignment:
Q  683 tccataaactttcgcaaacagttttacaagtacttatatcagtagataaactcaaata 740  Q
    ||||||| || ||||||||||||| |||||||||||| ||||||||||| || |||||    
T  24158506 tccataagctctcgcaaacagtttcacaagtacttatgtcagtagataagcttaaata 24158449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 740
Target Start/End: Original strand, 22667483 - 22667540
Alignment:
Q  683 tccataaactttcgcaaacagttttacaagtacttatatcagtagataaactcaaata 740  Q
    |||||||||| || |||||||| | |||||| ||||| ||||||||||| ||||||||    
T  22667483 tccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaata 22667540  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 740
Target Start/End: Original strand, 22724122 - 22724179
Alignment:
Q  683 tccataaactttcgcaaacagttttacaagtacttatatcagtagataaactcaaata 740  Q
    |||||||||| || |||||||| | |||||| ||||| ||||||||||| ||||||||    
T  22724122 tccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaata 22724179  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 699 - 740
Target Start/End: Original strand, 44237513 - 44237554
Alignment:
Q  699 aacagttttacaagtacttatatcagtagataaactcaaata 740  Q
    |||||||| |||||| ||||| ||||||||||||||||||||    
T  44237513 aacagtttcacaagtgcttatgtcagtagataaactcaaata 44237554  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 685 - 740
Target Start/End: Original strand, 40943995 - 40944050
Alignment:
Q  685 cataaactttcgcaaacagttttacaagtacttatatcagtagataaactcaaata 740  Q
    ||||||||||  |||||||||| |||||| ||||| ||| ||||||||||||||||    
T  40943995 cataaacttttccaaacagtttcacaagtgcttatgtcattagataaactcaaata 40944050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 747
Target Start/End: Complemental strand, 37419643 - 37419593
Alignment:
Q  697 caaacagttttacaagtacttatatcagtagataaactcaaatacgtcaat 747  Q
    |||| ||||| |||||| ||||||| |||||||||||||||||| ||||||    
T  37419643 caaagagtttcacaagtgcttatataagtagataaactcaaataagtcaat 37419593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 740
Target Start/End: Complemental strand, 5759565 - 5759508
Alignment:
Q  683 tccataaactttcgcaaacagttttacaagtacttatatcagtagataaactcaaata 740  Q
    ||||||| || || |||||||| | ||||||||||||| || ||||||||||||||||    
T  5759565 tccataagctctcccaaacagtctcacaagtacttataccaatagataaactcaaata 5759508  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 697 - 740
Target Start/End: Original strand, 50998638 - 50998681
Alignment:
Q  697 caaacagttttacaagtacttatatcagtagataaactcaaata 740  Q
    |||||||||||| |||| ||||||||| ||||||||||||||||    
T  50998638 caaacagttttataagttcttatatcaatagataaactcaaata 50998681  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 685 - 739
Target Start/End: Complemental strand, 8536043 - 8535989
Alignment:
Q  685 cataaactttcgcaaacagttttacaagtacttatatcagtagataaactcaaat 739  Q
    |||||||| || |||||||| | |||||||||||| |||||||||||| ||||||    
T  8536043 cataaactctcccaaacagtctcacaagtacttatgtcagtagataaattcaaat 8535989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 738
Target Start/End: Complemental strand, 25881391 - 25881350
Alignment:
Q  697 caaacagttttacaagtacttatatcagtagataaactcaaa 738  Q
    |||||||| | |||||||||||| ||||||||||||||||||    
T  25881391 caaacagtctcacaagtacttatgtcagtagataaactcaaa 25881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 697 - 755
Target Start/End: Original strand, 24048634 - 24048692
Alignment:
Q  697 caaacagttttacaagtacttatatcagtagataaactcaaatacgtcaattgaaacaa 755  Q
    |||||||| ||  |||||||||| |||||||||||||||||||| || |||| ||||||    
T  24048634 caaacagtcttttaagtacttatgtcagtagataaactcaaataagtaaattcaaacaa 24048692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 708 - 754
Target Start/End: Original strand, 41040270 - 41040316
Alignment:
Q  708 acaagtacttatatcagtagataaactcaaatacgtcaattgaaaca 754  Q
    |||| ||||||||||||||||||||||||||||  |||||| |||||    
T  41040270 acaaatacttatatcagtagataaactcaaataaatcaattcaaaca 41040316  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 708 - 754
Target Start/End: Complemental strand, 7351636 - 7351590
Alignment:
Q  708 acaagtacttatatcagtagataaactcaaatacgtcaattgaaaca 754  Q
    |||||| ||||| |||||||||||||||||||| ||||||| |||||    
T  7351636 acaagtgcttatgtcagtagataaactcaaataagtcaatttaaaca 7351590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 698 - 747
Target Start/End: Original strand, 29249488 - 29249537
Alignment:
Q  698 aaacagttttacaagtacttatatcagtagataaactcaaatacgtcaat 747  Q
    ||||||| ||||||||||||||| ||||| |||| |||||||| ||||||    
T  29249488 aaacagtcttacaagtacttataacagtaaataagctcaaataagtcaat 29249537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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