View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_20 (Length: 433)
Name: NF14664_low_20
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 5 - 417
Target Start/End: Complemental strand, 27313429 - 27313011
Alignment:
| Q |
5 |
gagatgaaccatagcaaaagtgatccaatcattaataaggaaaaaactttggatctccaaaatactaatgaagtaacaaatcgaggaattgggaaaagat |
104 |
Q |
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| T |
27313429 |
gagatgaaccatagcaaaagtgatccaatcattaataaggaaaaaactttggatctccaaaatgctaatgaagtaacaaatcgaggaattgggcaaagat |
27313330 |
T |
|
| Q |
105 |
cataaaatacgagtcttaaaagtttcaaaattttgaataaaccaaatctacattaagctctcaaataaatcttacatatattttcttaattatgtaaaaa |
204 |
Q |
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| T |
27313329 |
cataaaataggagtcttaaaagtttcaaaattttgaataaaccaaatctacattaagctctcaaataaatcttacatatattttcttaattatgtaaaaa |
27313230 |
T |
|
| Q |
205 |
catatacatg------aacaactgagtactattacaagggataatcaaataacactctagacctagttaaataacataagtttaacctaaccaatcatcc |
298 |
Q |
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| T |
27313229 |
catatacatgaacatgaacaactgagtactattacaagggataatcaaataacactctagacctaattaaataacataagtttaacctaaccaatcatcc |
27313130 |
T |
|
| Q |
299 |
attcnnnnnnnncacaatcaaagtttttattgaatggagtagaacaagtatttcaacatgtgacaatgatccactcttgcaattaactacacaggaaaca |
398 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27313129 |
attcttttttttcacaatcgaagtttttattgaatggagtagaacaagtatttcaacatgtgacaatcatccactcttgcaattaactacacaggaaaca |
27313030 |
T |
|
| Q |
399 |
aaagatcagaggatcgttc |
417 |
Q |
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| T |
27313029 |
aaagatcagaggatcgttc |
27313011 |
T |
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