View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_21 (Length: 428)
Name: NF14664_low_21
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 299
Target Start/End: Complemental strand, 17813108 - 17812825
Alignment:
| Q |
15 |
ttatactctatttgttagtgaaccattgatgagcactcataatatgactgcaactcatgctgacattgaatgtctttgtcctgaaaaaccaataaaagat |
114 |
Q |
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| T |
17813108 |
ttatactctatttgttagtgaaccattgatgagcactcataatatgactgcaactcgtgctgacattgaatgtctttgtcctgaaaaaccaataaaagat |
17813009 |
T |
|
| Q |
115 |
gtggttagtataacatgttgtagaggaattttaatatcttatgtattttgttaaaaaatatatattaatatgctttaatatgataggttctcacttatgt |
214 |
Q |
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| T |
17813008 |
gtggttactgtaa-atgttgcagaggaactttaatatcttatgtattttgttaaaagttatatattaatctgctttaatatgataggttctcacttatgt |
17812910 |
T |
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| Q |
215 |
tgctgaaaaaacatgttgggttcnnnnnnntcttaatcacaatgttgtttgggtgatgccaccaacttttcatatgagtaattag |
299 |
Q |
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| T |
17812909 |
tgcttaaaaaccatgttgggttcaaaagaattttaatcacaatgttgtttgggtgatgccaccaacttttcatatgagtaattag |
17812825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 372 - 409
Target Start/End: Complemental strand, 17812752 - 17812716
Alignment:
| Q |
372 |
gaagatgtttttaatggatctatattttatgaacttat |
409 |
Q |
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| T |
17812752 |
gaagatgtttttaatg-atctatattttatgaacttat |
17812716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 9417625 - 9417342
Alignment:
| Q |
18 |
tactctatttgttagtgaaccattgatgagcactcataatatgactgcaactcatgctgacattgaatgtctttgtcctgaaaaaccaataaaagatgtg |
117 |
Q |
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| T |
9417625 |
tactctatttttcagtgaaccattgatgaccactcataatatggttgcaactcgtgctgacattgaatgtctttgtcctggaaaaccaataaaagatgtg |
9417526 |
T |
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| Q |
118 |
gttagtataacatgttgtagaggaattttaatatcttatgtattttgttaaaaaa--tatatattaatatgctttaatatgataggttctcacttatgtt |
215 |
Q |
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|||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| ||||||| |
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| T |
9417525 |
gttagtattacacgttgtagaggaattttaatatcttatgtattttgttaaaaaaagtatatatcaatctgctttaatatgataggttctcagttatgtt |
9417426 |
T |
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| Q |
216 |
gctgaaaaaacatgttgggttcnnnnnnntcttaatcacaatgttgtttgggtgatgccaccaacttttcatatgagtaattag |
299 |
Q |
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| T |
9417425 |
gctggaaaaacatgctgggttcaaaagaatcttagtcacaatgctgtttgggtgatgccgccaacttttcatgtgagtagttag |
9417342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 12003929 - 12004037
Alignment:
| Q |
15 |
ttatactctatttgttagtgaaccattgatgagcactcataatatgactgcaactcatgctgacattgaatgtctttgtcctgaaaaaccaataaaagat |
114 |
Q |
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||||||||||||| | |||||||||||||||| ||||||||||||| |||||||| || |||||||||||||||||||||| |||||||||||||||| |
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| T |
12003929 |
ttatactctatttttcagtgaaccattgatgaccactcataatatggttgcaactcgtgttgacattgaatgtctttgtcctagaaaaccaataaaagat |
12004028 |
T |
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| Q |
115 |
gtggttagt |
123 |
Q |
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||||||||| |
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| T |
12004029 |
gtggttagt |
12004037 |
T |
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