View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_23 (Length: 424)
Name: NF14664_low_23
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_23 |
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| [»] scaffold0014 (1 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 181 - 408
Target Start/End: Original strand, 29745078 - 29745305
Alignment:
| Q |
181 |
gtagttaacaatgcaaattaaagtaatagcacacataatacaagcacatttaatacacggataaatttgcaaattaaacatcacttcgatcaaaaacaac |
280 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29745078 |
gtagttaacaatgcaaattaaagtaatagttcacataatacaagcacatttaatacacggataaatttgcaaattaaacatcactttgatcaaaaacaac |
29745177 |
T |
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| Q |
281 |
ttaacataatattctttaaaaattaaacacaagctttctaattcataaattactaaaatcatctgaatttggcatatttaaaatcatcaatcaaacaaac |
380 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29745178 |
ttaacataatattctttaaaaattaaacacaagctttctaattcataaattactaaaatcatctgaatttggcatatttaaaatcatcaatcaaacaaac |
29745277 |
T |
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| Q |
381 |
acaacatgcttaatttgatggcttcttc |
408 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
29745278 |
acaacacgcttaatttgatggcttcttc |
29745305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 225 - 408
Target Start/End: Complemental strand, 30935919 - 30935736
Alignment:
| Q |
225 |
cacatttaatacacggataaatttgcaaattaaacatcacttcgatcaaaaacaacttaacataatattctttaaaaattaaacacaagctttctaattc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30935919 |
cacatttaatacacggataaatttgcaaattaaacatcactttgatcaaaaacaacttaacataatattctttaaaaattaaacacaagctttctaattc |
30935820 |
T |
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| Q |
325 |
ataaattactaaaatcatctgaatttggcatatttaaaatcatcaatcaaacaaacacaacatgcttaatttgatggcttcttc |
408 |
Q |
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| T |
30935819 |
ataaattactaaaatcatctgaatttggcatatttaaaaacatcaatcaaacaaacacaacatgcttaatttgatggcttcttc |
30935736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 44326563 - 44326526
Alignment:
| Q |
181 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44326563 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
44326526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 19718 - 19681
Alignment:
| Q |
181 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
19718 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
19681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 6052164 - 6052201
Alignment:
| Q |
181 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
6052164 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
6052201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 22016455 - 22016418
Alignment:
| Q |
181 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
22016455 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
22016418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 15881957 - 15881920
Alignment:
| Q |
181 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |
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| T |
15881957 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
15881920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 7430078 - 7430115
Alignment:
| Q |
181 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
7430078 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
7430115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 14607001 - 14606964
Alignment:
| Q |
181 |
gtagttaacaatgcaaattaaagtaatagcacacataa |
218 |
Q |
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|
||||||||||| ||||||||||||||||||||| |||| |
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| T |
14607001 |
gtagttaacaaagcaaattaaagtaatagcacatataa |
14606964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 52525 - 52561
Alignment:
| Q |
182 |
tagttaacaatgcaaattaaagtaatagcacacataa |
218 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
52525 |
tagttagcaatgcaaattaaagtaatagcacacataa |
52561 |
T |
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