View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_25 (Length: 406)
Name: NF14664_low_25
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_25 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 39180478 - 39180072
Alignment:
| Q |
1 |
agaaaagctatagtagcagcgccggaaactgaactgtagaaatatatagttcactttaatttttattttatcnnnnnnnnnntattagtgacttatttta |
100 |
Q |
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| T |
39180478 |
agaaaagctatagtagcagcgccggaaactgaactgtagaaatatatagttcactttaatttttattttatcaaaaaaaaaatattagtgacttatttta |
39180379 |
T |
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| Q |
101 |
ttttattctcacttttctatataattaatcagatgttgaaaatgtcttacattcctttatatctactttttctattaaattttgtttccacgttaaaaat |
200 |
Q |
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| T |
39180378 |
ttttattctcacttttctatataattaatcagatgttgaaaaagtcttacattcctttatatctactttttctattaaattttgtttccacgttcaaaat |
39180279 |
T |
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| Q |
201 |
tgtgaaa-caattacaagcatattctgtaaatgttgtgcctgccggctgcttatgatataatggtgacatgctgttattctaattaattactggtaataa |
299 |
Q |
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| T |
39180278 |
tgtgaaaacaattacaagcatattctgtaaatgttgtgcctgccggctgcttatgatataatggtgacatgctgttattctaattaattactggtaataa |
39180179 |
T |
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| Q |
300 |
gtaatgaatagtaacggtaaactgtcatatatctttgttagaggccacgtgtacatatatggatactagtacctatctatttagcataaaaaatgctttc |
399 |
Q |
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| T |
39180178 |
gtaatgaatagtaacggtaaactgtcatatatctttgttagaggccacgtgtacatatatggatactagtacctatctatttagcataaaaaatgctttt |
39180079 |
T |
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| Q |
400 |
ggcaatt |
406 |
Q |
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| T |
39180078 |
ggcaatt |
39180072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 39221876 - 39221658
Alignment:
| Q |
2 |
gaaaagctatagtagcagcg-ccggaaactgaactgtagaaatatatagttcactttaatttttattttatcnnnnnnnnnntattagtgacttatttta |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| | || | || |||||||||| |||| |
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| T |
39221876 |
gaaaagctatagtagcagccaccggaaactgaactgtagaa---tatagttcactttaatttttttattttattaaaacaattactagtgactta-ttta |
39221781 |
T |
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| Q |
101 |
ttttattctcacttttctatataattaatcagatgttgaaaatgtcttacattcc--tttatatctactttttctattaaattttgtttccacgttaaaa |
198 |
Q |
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| T |
39221780 |
ttttattctcacttttctgt-------atctgatgttaaaaaagttttactttcctttttttatctattttttctattaaactt--tttccacatt-aaa |
39221691 |
T |
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| Q |
199 |
attgtgaaacaattacaagcatattctgtaaat |
231 |
Q |
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| T |
39221690 |
attgtgaaacagttacaagcatattctgtaaat |
39221658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 39221563 - 39221526
Alignment:
| Q |
356 |
atatggatactagtacctatctatttagcataaaaaat |
393 |
Q |
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| T |
39221563 |
atatggatactagtacctatctatttggcataaaaaat |
39221526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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