View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_26 (Length: 405)
Name: NF14664_low_26
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 45 - 382
Target Start/End: Original strand, 47780160 - 47780500
Alignment:
| Q |
45 |
tgaacatgatgttggttcaatctttttcaacagactaagtgaaacgggtcaacttgagttgtcaatctcaaaacttcattttaaattacggttaaatacg |
144 |
Q |
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| T |
47780160 |
tgaacatgatgttggttcaatctttttcatcagactaagtgaaacgggacaacttgagttgtcaatctcaaaacttcattttaaattacggttaaatacg |
47780259 |
T |
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| Q |
145 |
gcacgctaataggctcgatccgtctgttttatcatccttctgctaaactcaatttatgttggttatgattcactcgcactcttattaattggattaacnn |
244 |
Q |
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| T |
47780260 |
acacgttaataggctcgatccgtctgttttatcatccttctgctaaactcaatttatgttggttatgattcactcgcactcttattaattggattaactt |
47780359 |
T |
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| Q |
245 |
nnnnnaccac---taataattcaatccagcttgcaaagtccgtgtcaatttcccaacctaaaagaaacaagattcatgatctgattttcgcaatggactc |
341 |
Q |
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| T |
47780360 |
tttttaccactaataataattcaatccagcttgcaaagtccgtgtcaatttcccaacctaaaagaaacaagattcatgatctgattttcgcaatggactc |
47780459 |
T |
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| Q |
342 |
attgatttaaactggtcctttaagttagaaaatgatttagg |
382 |
Q |
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| T |
47780460 |
attggtttaaactggtcctttaagttagaaaatgatttagg |
47780500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 49 - 376
Target Start/End: Original strand, 47787219 - 47787554
Alignment:
| Q |
49 |
catgatgttggttcaatctttttcaacagactaagtgaaacgggtcaacttgagttgtcaatctcaaaactt----------cattttaaattacggtta |
138 |
Q |
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| T |
47787219 |
catgatgttggttcactctttttcaacaaactaagtgaaacgggtcaacttgagttgtcaagctcaaaacttcacctcgctccattttaaattacagtta |
47787318 |
T |
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| Q |
139 |
aatacggcacgctaataggctcgatccgtctgttttatcatcc-ttctgctaaactcaatttatgttggttatgattcactcgcactcttattaattgga |
237 |
Q |
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| T |
47787319 |
aatacggcaggctaataggcttaatccgtctgttttatcatcctttccgttaaactcaattttcattggtaatgattca----cactattattaattgga |
47787414 |
T |
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| Q |
238 |
ttaac-nnnnnnnaccactaataattcaatccagcttgcaaagtccgtgtcaatttcccaacctaaaagaaacaagattcatgatctgattttcgcaatg |
336 |
Q |
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| T |
47787415 |
ttaacttttttttaccactactaactcaatccagcttgaaaagtctttgtcatttccacaacctaaaagaaacatgatttgcgatctgcttttcgcaata |
47787514 |
T |
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| Q |
337 |
gactcattgatttaaactggtcctttaagttagaaaatga |
376 |
Q |
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| T |
47787515 |
gattcgttgatttaaattggtcctttatgttagaaaatga |
47787554 |
T |
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