View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_31 (Length: 353)
Name: NF14664_low_31
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 39026867 - 39026529
Alignment:
| Q |
1 |
atttataattatactaaaatgtgtgattttctcaagttattagccgtatcgacgtgtctatatttacatcgtgtccagtgtcatgtccatatacgtgctt |
100 |
Q |
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| T |
39026867 |
atttataattacattaaaatatgtgattttctcaagttattagctgcatcgacgtatatgtatttgcatcgtgtccgatgtcatgtccatatacgtgctt |
39026768 |
T |
|
| Q |
101 |
cataggttgttaggtagagataaagagtcaaagtctagttaaccaatttaggtagagttagagtggttaaagaaaatatttataagtttatttataggaa |
200 |
Q |
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| T |
39026767 |
cataggttgttaggtagagataatgagtcaaagtctagttaaccaatttaggtagagttagagtggttaaagaaaatatttataagtttatttataggaa |
39026668 |
T |
|
| Q |
201 |
gcaaaatgagaagcatatat----atatctagtttagtttctaaaattaagatatgaaaacagaattaggtaattgatttgattccaaatgaatagtgtc |
296 |
Q |
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| T |
39026667 |
gcaaaatgagaagcatatatatatatatctagtttagtttctaaaattaagatatgaaaatagaattaggtaattgatttgattccaaatgaatagtgtc |
39026568 |
T |
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| Q |
297 |
cacgttcttgatgaaaaggaaagagaaccccacttaagg |
335 |
Q |
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| T |
39026567 |
cacgttcttgatgaaaaggaaagagaaccccacttaagg |
39026529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 7328704 - 7328757
Alignment:
| Q |
4 |
tataattatactaaaatgtgtgattttctcaagttattagccgtatcgacgtgt |
57 |
Q |
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| T |
7328704 |
tataattacactaaattatgttattttctcaaattattagcagtatcgacgtgt |
7328757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 3721139 - 3721099
Alignment:
| Q |
4 |
tataattatactaaaatgtgtgattttctcaagttattagc |
44 |
Q |
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| T |
3721139 |
tataattatactaaattatgtgattttctcaaattattagc |
3721099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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