View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_32 (Length: 326)
Name: NF14664_low_32
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 141 - 308
Target Start/End: Complemental strand, 8847610 - 8847446
Alignment:
| Q |
141 |
atttataggcaatatgaagattacaattaacctaattacaagctataatgaacatgcttaagtaagctaaattagttaacttgtatctcaagtaaactag |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
8847610 |
atttataggcaatatgaagattacaattaacctaattacaagctataatgaacatgcttaagtaagctaaactagttaact---atctcaagtaaactag |
8847514 |
T |
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| Q |
241 |
gagacttcactttattataactttcattctctaatagctatagaggatctatttgtatttgtacacac |
308 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8847513 |
gagacttcactttattatgactttcattctctaatagctatagaggatctatttgtatttgtacacac |
8847446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 141 - 276
Target Start/End: Complemental strand, 8854889 - 8854754
Alignment:
| Q |
141 |
atttataggcaatatgaagattacaattaacctaattacaagctataatgaacatgcttaagtaagctaaattagttaacttgtatctcaagtaaactag |
240 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
8854889 |
atttatagacaatatgaagattacaattaacctaattacaagctataatgaacatgcttaagtaagctaaactagttaacttgtatctcaaataaactag |
8854790 |
T |
|
| Q |
241 |
gagacttcactttattataactttcattctctaata |
276 |
Q |
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| T |
8854789 |
gagacttcactttattatgactttcattctctaata |
8854754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 29 - 142
Target Start/End: Complemental strand, 8847749 - 8847636
Alignment:
| Q |
29 |
gaagaaacagatcgtaactaacttttgtaacaaacttccaccatggaaatgagagaaaaaagctctgataccatgttatgggaagcaaataatgaaaaga |
128 |
Q |
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| T |
8847749 |
gaagaaacggattgtaactaacttttgtaacaaacttccacaatggaaatgagagaaaaaagctctgataccatgttatgggaagcaaataatgaaaaaa |
8847650 |
T |
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| Q |
129 |
atctcatttctcat |
142 |
Q |
| |
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|||||||||||||| |
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| T |
8847649 |
atctcatttctcat |
8847636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 8854955 - 8854915
Alignment:
| Q |
102 |
tgttatgggaagcaaataatgaaaagaatctcatttctcat |
142 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||| |
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| T |
8854955 |
tgttatgggaagtaaataataaaaagaatctcatttctcat |
8854915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 7e-40; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 47 - 142
Target Start/End: Original strand, 4648277 - 4648372
Alignment:
| Q |
47 |
taacttttgtaacaaacttccaccatggaaatgagagaaaaaagctctgataccatgttatgggaagcaaataatgaaaagaatctcatttctcat |
142 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4648277 |
taacttttgtaataaacttccaccatggaaatgagagaaaaaagctccgataccatgttatgggaagcaaataatgaaatgaatctcatttctcat |
4648372 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 141 - 258
Target Start/End: Original strand, 4648421 - 4648538
Alignment:
| Q |
141 |
atttataggcaatatgaagattacaattaacctaattacaagctataatgaacatgcttaagtaagctaaattagttaacttgtatctcaagtaaactag |
240 |
Q |
| |
|
|||| ||||||||||| | |||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| | ||||||||||||| |
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| T |
4648421 |
atttgtaggcaatatgcatattacaattagcctaattacaagctaaaatgaacatgcttaagtaagctaaactagttaacttgtgtatcaagtaaactag |
4648520 |
T |
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| Q |
241 |
gagacttcactttattat |
258 |
Q |
| |
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||| ||| |||||||||| |
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| T |
4648521 |
gagcctttactttattat |
4648538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 141 - 276
Target Start/End: Original strand, 4642548 - 4642682
Alignment:
| Q |
141 |
atttataggcaatatgaagattacaattaacctaattacaagctataatgaacatgcttaagtaagctaaattagttaacttgtatctcaagtaaactag |
240 |
Q |
| |
|
||||||||| |||||| |||||||| ||| ||||||||||||||| || |||| |||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
4642548 |
atttataggaaatatgcagattacagttagcctaattacaagctaaaacgaacgtgcttaagtaagctaact-agttaacttgtatctcaagtaaactag |
4642646 |
T |
|
| Q |
241 |
gagacttcactttattataactttcattctctaata |
276 |
Q |
| |
|
||| ||| |||||||||| || ||| |||||||||| |
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| T |
4642647 |
gagcctttactttattatgaccttctttctctaata |
4642682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 28736427 - 28736339
Alignment:
| Q |
20 |
gaagatgaagaagaaacagatcgtaactaacttttgtaacaaacttccaccatggaaatgagagaaaaaagctctgataccatgttatg |
108 |
Q |
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||||| || |||||||| ||| |||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
28736427 |
gaagaagatgaagaaacggattgtaactaacttttgtaactaacttccgccatggaagagagagaaaaaactcctgataccatgttatg |
28736339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 3137734 - 3137825
Alignment:
| Q |
54 |
tgtaacaaacttccaccatggaaatgag-agaaaaaagctct-gataccatgttatgggaagcaaataat-gaaaagaatctcatttctcat |
142 |
Q |
| |
|
|||||| |||| || ||||||||||||| | ||||||||||| ||||||||||||||| |||||| ||| ||||| | ||||||||||||| |
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| T |
3137734 |
tgtaactaactcccgccatggaaatgagaaaaaaaaagctctagataccatgttatggaaagcaagaaatagaaaatagtctcatttctcat |
3137825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 117
Target Start/End: Complemental strand, 24674531 - 24674475
Alignment:
| Q |
61 |
aacttccaccatggaaatgagagaaaaaagctct-gataccatgttatgggaagcaaa |
117 |
Q |
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|||||||||||||||||||||| | ||||||||| |||||||| |||||| ||||||| |
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| T |
24674531 |
aacttccaccatggaaatgaga-agaaaagctctagataccatcttatggaaagcaaa |
24674475 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 34064930 - 34064842
Alignment:
| Q |
55 |
gtaacaaacttccaccatggaaatgagagaaaaaagct-ctgataccatgttatgggaagcaaataatgaaaagaatctcatttctcat |
142 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||| | | ||| |||||| |||||||||||||| |
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| T |
34064930 |
gtaactaacttccgccatggaagagagagaaaaaagctcctgataccatgttatggaatgtaaaatgtgaaaatgatctcatttctcat |
34064842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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