View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_34 (Length: 315)
Name: NF14664_low_34
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_34 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 27791961 - 27792258
Alignment:
| Q |
18 |
attagtgctttagttacaacttaaatgtgttgatcatcacctagatcgagatattgttctaattaatcaaactcaattcgtacaaatggttggataatca |
117 |
Q |
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| T |
27791961 |
attagtgctttagttacaacttaaatgtgttgatcatcacctagatcgagatattgttctaattaatcaaactcaattcatacaaatggttggataatca |
27792060 |
T |
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| Q |
118 |
cttgattttgcaactatgtttgcaacttccggtagacaaaaaatcaatgaattgaacattgttttccttgttcttcagttccataacatcttgattgact |
217 |
Q |
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| T |
27792061 |
cttgattttgcaactatgtttgcaacttccggtagacaaaaaatcaatgaattgaacattgttttccttgttcttcagttccataacatcttgattgact |
27792160 |
T |
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| Q |
218 |
tcctcatcatctcttctagcattatcagttacttcacttttattggaatctacttgaagaaaatcatagaactcaattgattgactttttctatctac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27792161 |
tcctcatcatctcttctagcattatcagttacttcacttttattggaatctacttgaagaaaatcatagaactcaattgattgactttttttatctac |
27792258 |
T |
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