View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_38 (Length: 284)
Name: NF14664_low_38
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 3083781 - 3083503
Alignment:
| Q |
1 |
gaatattcatttactagtaaaagaatgcacattgcttannnnnnnggatccgtaaaatgatt--------------tatatatatgaagaacagaagaag |
86 |
Q |
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| T |
3083781 |
gaatattcatttactagtaaaagaatgcacattgcttatttttttggatccatgaaatgatttatatatatatatatatatatatgaagaacagaagaag |
3083682 |
T |
|
| Q |
87 |
aattataagatgaaaacctttatgtgttgtaaacatgatcctatgaacggtggcatgcaaaagaagagtgattgtgttggtgttagcatattccaaaaga |
186 |
Q |
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| T |
3083681 |
aattataagatgaaaacctttatgtgttgtaaacaagatcctatgaacggtggcatgcaaaagaagagtgattgtgttggtgttagcatattccaaaaga |
3083582 |
T |
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| Q |
187 |
tcagctgcagtgtgtctattaccattatggtcaaagattgtacctccaaccttagtcccatgaatatgatcataagtaa |
265 |
Q |
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| T |
3083581 |
tcagcagcagtgtgtctatgaccattatggtcaaagattgtacctccaaccttagtcccatgaatgtgatcataagtaa |
3083503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 96 - 265
Target Start/End: Complemental strand, 3092112 - 3091943
Alignment:
| Q |
96 |
atgaaaacctttatgtgttgtaaacatgatcctatgaacggtggcatgcaaaagaagagtgattgtgttggtgttagcatattccaaaagatcagctgca |
195 |
Q |
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| T |
3092112 |
atgaaaacctttgctttttgtaaacaagattctatgaacggtggcatgcaaaagaagagtgattgtgttggtgttagcatattccaaaagatcagctgca |
3092013 |
T |
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| Q |
196 |
gtgtgtctattaccattatggtcaaagattgtacctccaaccttagtcccatgaatatgatcataagtaa |
265 |
Q |
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| T |
3092012 |
gtgtgtctatgaccattatggtcaaagattgtacctccaaccttagtcccatgaatatgatcataagtaa |
3091943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 3092196 - 3092163
Alignment:
| Q |
2 |
aatattcatttactagtaaaagaatgcacattgc |
35 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
3092196 |
aatattcatttgctagtaaaagaatgcacattgc |
3092163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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