View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14664_low_47 (Length: 252)

Name: NF14664_low_47
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14664_low_47
NF14664_low_47
[»] chr4 (8 HSPs)
chr4 (184-252)||(26646282-26646350)
chr4 (85-151)||(26646156-26646221)
chr4 (199-252)||(13683502-13683555)
chr4 (199-252)||(13689814-13689867)
chr4 (199-252)||(22187897-22187950)
chr4 (85-146)||(13690053-13690114)
chr4 (211-252)||(33078117-33078158)
chr4 (90-145)||(24409203-24409258)
[»] chr8 (4 HSPs)
chr8 (199-252)||(36996850-36996903)
chr8 (199-242)||(37006690-37006733)
chr8 (211-252)||(34592504-34592545)
chr8 (199-252)||(36991690-36991743)
[»] chr7 (1 HSPs)
chr7 (85-146)||(8596337-8596398)


Alignment Details
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 26646282 - 26646350
Alignment:
Q  184 aatttgaaagagagaaaagttcacctcaattttattcctgcatccattaaataaataattagaatatga 252  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646282 aatttgaaagagagtaaagttcacctcaattttattcctgcatccattaaataaataattagaatatga 26646350  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 85 - 151
Target Start/End: Original strand, 26646156 - 26646221
Alignment:
Q  85 cttttccccttgcatatcttcggtggattgtcaaatacaggcaagtccacaattcgaccgctatata 151  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26646156 cttttccccttgcatatcttcggtggattgtcaaatacagg-aagtccacaattcgaccgctatata 26646221  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 13683555 - 13683502
Alignment:
Q  199 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatga 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13683555 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatga 13683502  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 13689867 - 13689814
Alignment:
Q  199 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatga 252  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13689867 aaagttcaccttaattttattcctgcatccattaaataaataattagaatatga 13689814  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 22187897 - 22187950
Alignment:
Q  199 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatga 252  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  22187897 aaagtttacctcaattttattcctgcatccattaaatagataattagaatatga 22187950  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 13690114 - 13690053
Alignment:
Q  85 cttttccccttgcatatcttcggtggattgtcaaatacaggcaagtccacaattcgaccgct 146  Q
    ||||||||||| ||||||||| |||||| ||||||||||| ||| |||||||||||||||||    
T  13690114 cttttccccttacatatcttctgtggatcgtcaaatacagtcaaatccacaattcgaccgct 13690053  T

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Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 33078158 - 33078117
Alignment:
Q  211 aattttattcctgcatccattaaataaataattagaatatga 252  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  33078158 aattttattcctgcatccattaaataaataattagaatatga 33078117  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 24409203 - 24409258
Alignment:
Q  90 ccccttgcatatcttcggtggattgtcaaatacaggcaagtccacaattcgaccgc 145  Q
    |||||| ||||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  24409203 ccccttacatatcttcagtggattgtcaaatacagtcaagtccacaatttgaccgc 24409258  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 36996850 - 36996903
Alignment:
Q  199 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatga 252  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36996850 aaagtttacctcaattttattcctgcatccattaaataaataattagaatatga 36996903  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 37006690 - 37006733
Alignment:
Q  199 aaagttcacctcaattttattcctgcatccattaaataaataat 242  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  37006690 aaagtttacctcaattttattcctgcatccattaaataaataat 37006733  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 34592545 - 34592504
Alignment:
Q  211 aattttattcctgcatccattaaataaataattagaatatga 252  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  34592545 aattttatgcctgcatccattaaataaataattagaatatga 34592504  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 36991690 - 36991743
Alignment:
Q  199 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatga 252  Q
    ||||||||| | |||||| | |||||||||||||||||||||||||||||||||    
T  36991690 aaagttcactttaattttttgcctgcatccattaaataaataattagaatatga 36991743  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 8596337 - 8596398
Alignment:
Q  85 cttttccccttgcatatcttcggtggattgtcaaatacaggcaagtccacaattcgaccgct 146  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  8596337 cttttccccttacatatcttcggtggattgtcaaatacagtcaagtccacaattcaaccgct 8596398  T

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