View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14664_low_55 (Length: 238)
Name: NF14664_low_55
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_55 |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold1801 (1 HSPs) |
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| [»] scaffold1118 (2 HSPs) |
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| [»] scaffold0902 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 9884642 - 9884426
Alignment:
| Q |
18 |
tttaggtccaggggaattgatgaagtcttctaacattggccaagtactagattgaacatatgctgtgataaagctttcataatatgtgtgttcgtatgtt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
9884642 |
tttaggtccaggggaattgatgaagtcttctaacattggcctagtactagagtgaacatgtgctgtgataaagctttcataatatgtgtgttcgtatgtt |
9884543 |
T |
|
| Q |
118 |
gattctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgttta |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9884542 |
gattctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgttta |
9884443 |
T |
|
| Q |
218 |
ggattagttgatctgtg |
234 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
9884442 |
ggattagttgatctgtg |
9884426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 224
Target Start/End: Complemental strand, 14316261 - 14316166
Alignment:
| Q |
128 |
tttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgtttaggattag |
224 |
Q |
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||||||||| | |||||| |||||||||||||| |||||||| ||||||||||| ||||||| ||||| |||||||| |||||| |||||||| |
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| T |
14316261 |
tttctttgtgaggaaatttagtatttttgcatttagggtttctttaaaccattgccacgaaattg-aaaagagttcatttgatttgttaaggattag |
14316166 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 14247731 - 14247683
Alignment:
| Q |
128 |
tttctttgtaatgaaattctgtatttttgcattttgggtttctctaaac |
176 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| |||||||||||||| |
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|
| T |
14247731 |
tttctttgtgatgaaatttagtatttttgcatttagggtttctctaaac |
14247683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 20421274 - 20421489
Alignment:
| Q |
18 |
tttaggtccaggggaattgatgaagtcttctaacattggccaagtactagattgaacatatgctgtgataaagctttcataatatgtgtgttcgtatgtt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||| ||| | ||||||||||||| |||||| |
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| T |
20421274 |
tttaggtccaggggaattgatgaagtcttctaacattggcatagtactagagtgaacatgtgttgtgataaag-tttgaaaatatgtgtgttcttatgtt |
20421372 |
T |
|
| Q |
118 |
gattctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgttta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20421373 |
gattctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgttta |
20421472 |
T |
|
| Q |
218 |
ggattagttgatctgtg |
234 |
Q |
| |
|
||||||||||||||||| |
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| T |
20421473 |
ggattagttgatctgtg |
20421489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 135105 - 135322
Alignment:
| Q |
18 |
tttaggtccaggggaattgatgaagtcttctaacattggccaagtactagattgaacatatgctgtgataaagctttcataatatgtgtgttcgtatgtt |
117 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||||||| |||||||| |||| | |
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| T |
135105 |
tttatgtccaggggaattgatgacgtcttctaacattggcctagtactagagtgaacatgtgctgtgaaaaagctttcataatacgtgtgttcttatgct |
135204 |
T |
|
| Q |
118 |
gattctttggtttctttgtaatgaaattctgtattttt-gca-ttttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgtt |
215 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| || ||||||||||||| || |||||||||||| |
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|
| T |
135205 |
gattctttggtttctttgtgatgaaattctgtatttttcgcatttttgggtttctctaaaccattgccgacaaattgaaaaagg-ttaatttgttttgtt |
135303 |
T |
|
| Q |
216 |
taggattagttgatctgtg |
234 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
135304 |
taggattagttgatctgtg |
135322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 11954993 - 11955038
Alignment:
| Q |
189 |
attgaaaaaggtttcatttgttttgtttaggattagttgatctgtg |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11954993 |
attgaaaaaggtttcatttgttttgtttaggattagttgatctgtg |
11955038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 15607066 - 15607278
Alignment:
| Q |
18 |
tttaggtccaggggaattgatgaagtcttctaacattggccaagtactagattgaacatatgctgtgataaagctttcataatatgtgtgttcgtatgtt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| ||| ||| ||||||||||||||||| |||| | |
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| T |
15607066 |
tttaggtccaggggaattgatgaagtcttctgacattgtccttgtactagattgaacatatgctttgaaaaa---ttcataatatgtgtgttgatatgct |
15607162 |
T |
|
| Q |
118 |
gattctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgttta |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| | ||||||| |||||||||| ||||| ||||||||||||| |||||||||| || ||||| |
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|
| T |
15607163 |
gattctttggtttctttgtgatgaaattctgtattttcgtattttggttttctctaaattattgccaagaaattgaaaaatgtttcatttgcttagttta |
15607262 |
T |
|
| Q |
218 |
ggattagttgatctgt |
233 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
15607263 |
ggattagttgatctgt |
15607278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 70 - 234
Target Start/End: Original strand, 111990 - 112147
Alignment:
| Q |
70 |
tgaacatatgctgtgataaagctttcataatatgtgtgttcgtatgttgattctttggtttctttgtaatgaaattctgtatttttgcattttgggtttc |
169 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
111990 |
tgaacatgtgctgtgaaaaagctttcataatacgtgtgttcttatgctgattctttggtttctttgtgatgaaattctgtat-------ttttgggtttc |
112082 |
T |
|
| Q |
170 |
tctaaaccattgctgagaaattgaaaaaggtttcatttgttttgtttaggattagttgatctgtg |
234 |
Q |
| |
|
||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
112083 |
tctaaaccattgccgataaattgaaaaaggtttaatttgttttgtttaggattagttgatatgtg |
112147 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 111914 - 111962
Alignment:
| Q |
18 |
tttaggtccaggggaattgatgaagtcttctaacattggccaagtacta |
66 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
111914 |
tttatgtccaggggaattgatgaagtcttctaacattggcctagtacta |
111962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 36910024 - 36909908
Alignment:
| Q |
120 |
ttctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgtt--ta |
217 |
Q |
| |
|
|||| ||||||||||| |||||||| |||||||| |||||||||||| ||||||| ||||| |||||||||||| |||||||||||||||||| || |
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|
| T |
36910024 |
ttctatggtttctttgctatgaaatttagtatttttacattttgggtttttctaaactattgccaagaaattgaaaagggtttcatttgttttgtttata |
36909925 |
T |
|
| Q |
218 |
ggattagttgatctgtg |
234 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
36909924 |
ggattaggtgatctgtg |
36909908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1801 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1801
Description:
Target: scaffold1801; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 748 - 809
Alignment:
| Q |
120 |
ttctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattg |
181 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
748 |
ttctttggtttctctgtgataaaatttagtatttttgcattttgggtttttctaaaccattg |
809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 2278 - 2176
Alignment:
| Q |
123 |
tttggtttctttgtaatgaaattct--gtatttttgcattttgggtttctctaaaccattgctgagaaattgaaaaaggtttcatttgttttgtttagga |
220 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||| |||||||| || |||||||| |
|
|
| T |
2278 |
tttggtttctttgtgatgaaatttatagtatttttgcattttgtgtttctctaaaccattgtcacgaaattg-aaaagagttcatttgattcgtttagga |
2180 |
T |
|
| Q |
221 |
ttag |
224 |
Q |
| |
|
|||| |
|
|
| T |
2179 |
ttag |
2176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 2345 - 2308
Alignment:
| Q |
21 |
aggtccaggggaattgatgaagtcttctaacattggcc |
58 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
2345 |
aggtctaggggaattgatgaagtcttcttacattggcc |
2308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 2139 - 2088
Alignment:
| Q |
18 |
tttaggtccaggggaattgatgaagtcttctaacattggccaagtactagat |
69 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
2139 |
tttaggtctaggggaattgatgaagacttctgacattggcctagtactagat |
2088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 2053 - 1991
Alignment:
| Q |
120 |
ttctttggtttctttgtaatgaaattctgtatttttgcattttgggtttctctaaaccattgc |
182 |
Q |
| |
|
|||||||| || ||||| |||| ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
2053 |
ttctttgggttttttgtcatgatatttagaatttttgcattttgggtttctctaaaccattgc |
1991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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