View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14664_low_58 (Length: 237)
Name: NF14664_low_58
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_58 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 237
Target Start/End: Complemental strand, 19167215 - 19166989
Alignment:
| Q |
11 |
catcattttgttcaacacctccaaagaatacgtagaaataagaattcgtgcaaaatcaattctacctctttccaaagtacactcatcctcccgcacaaat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19167215 |
catcattttgttcaacacctccaaagaatacgtagaaataagaattcgtgcaaaatcaattctacctctttccaaagtacactcatcctcccgcacaaac |
19167116 |
T |
|
| Q |
111 |
cttccacacttagaaacacatagcttgaaaaaatttatgttccaagcatgtaccggcgtaccatagattcgtacccacgcaccacgttcataccaaactt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19167115 |
cttccacacttagaaacacatagcttgaaaaaatttatgttccaagcatgtaccggcgtaccatagattcgtacccaagcaccacgttcataccaaactt |
19167016 |
T |
|
| Q |
211 |
ctttcgacgtccatttatgcacatcgg |
237 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
19167015 |
ctttcgacgtccatttatgcacatcgg |
19166989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University