View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_59 (Length: 224)
Name: NF14664_low_59
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 78 - 218
Target Start/End: Original strand, 26646557 - 26646697
Alignment:
| Q |
78 |
agttcgattgattgagctcgtcactttgagtaaagttcttctccatttttcttcnnnnnnnnnnnnnnnnnnnnntagaatatgatcagcctgcacggtc |
177 |
Q |
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| T |
26646557 |
agttcgattgattgagctcgtcactttgagtaaagttcttctccatttttcttcaaaaataaataaataaataattagaatatgatcagcctgcacggtc |
26646656 |
T |
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| Q |
178 |
tactggatatcaagccaaaagcctagcaacactattgtatc |
218 |
Q |
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| T |
26646657 |
tactggatatcaagccaaaagcctaacaacactattgtatc |
26646697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 22187941 - 22188006
Alignment:
| Q |
153 |
tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattgtatc |
218 |
Q |
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| T |
22187941 |
tagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacactattgtatc |
22188006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 153 - 218
Target Start/End: Complemental strand, 13683511 - 13683446
Alignment:
| Q |
153 |
tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattgtatc |
218 |
Q |
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| T |
13683511 |
tagaatatgatcagcctgcacagtctactgggtatcaagccaaaagcctagcaacactattgtatc |
13683446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 26646341 - 26646406
Alignment:
| Q |
153 |
tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattgtatc |
218 |
Q |
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| T |
26646341 |
tagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaacactaatgtatc |
26646406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 33078126 - 33078065
Alignment:
| Q |
153 |
tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacactattg |
214 |
Q |
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| T |
33078126 |
tagaatatgatcagcctgcacagtctactagataacaagccaaaagcctagcaacactattg |
33078065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 26646483 - 26646524
Alignment:
| Q |
4 |
atctatttacagcaaaaatcaagtttaccttttgcttctccc |
45 |
Q |
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| T |
26646483 |
atctatttacagcaaaaatcaagtttaccttttgcttctccc |
26646524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33078336 - 33078298
Alignment:
| Q |
1 |
cccatctatttacagcaaaaatcaagtttaccttttgct |
39 |
Q |
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| T |
33078336 |
cccatctatttacagccaaaatcaagtttaccgtttgct |
33078298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 210
Target Start/End: Original strand, 36991734 - 36991791
Alignment:
| Q |
153 |
tagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctagcaacact |
210 |
Q |
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| T |
36991734 |
tagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaacact |
36991791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36996646 - 36996685
Alignment:
| Q |
1 |
cccatctatttacagcaaaaatcaagtttaccttttgctt |
40 |
Q |
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| T |
36996646 |
cccatctatttacagccaaaatcaagtttaccgtttgctt |
36996685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34592723 - 34592685
Alignment:
| Q |
1 |
cccatctatttacagcaaaaatcaagtttaccttttgct |
39 |
Q |
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| T |
34592723 |
cccatctatttacagccaaaatcaagtttaccgtttgct |
34592685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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