View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14664_low_64 (Length: 212)
Name: NF14664_low_64
Description: NF14664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14664_low_64 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 2 - 206
Target Start/End: Complemental strand, 5160204 - 5159999
Alignment:
| Q |
2 |
tattgataagaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac- |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5160204 |
tattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccact |
5160105 |
T |
|
| Q |
101 |
ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
5160104 |
ttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatga |
5160005 |
T |
|
| Q |
201 |
tccttg |
206 |
Q |
| |
|
|||||| |
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|
| T |
5160004 |
tccttg |
5159999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5195847 - 5195641
Alignment:
| Q |
1 |
atattgataagaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
5195847 |
atattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttaggaaaccac |
5195748 |
T |
|
| Q |
101 |
-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatg |
199 |
Q |
| |
|
||||||||||||||||||||| ||||||| | ||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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|
| T |
5195747 |
tttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtgctcaatgaaaatg |
5195648 |
T |
|
| Q |
200 |
atccttg |
206 |
Q |
| |
|
||||||| |
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|
| T |
5195647 |
atccttg |
5195641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5173121 - 5172915
Alignment:
| Q |
1 |
atattgataagaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5173121 |
atattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaaaccac |
5173022 |
T |
|
| Q |
101 |
-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||| | |||||||||||| || | | |||||||| |
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|
| T |
5173021 |
tttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaagattggagtgattagccaaaatgataagtgaaaatg |
5172922 |
T |
|
| Q |
200 |
atccttg |
206 |
Q |
| |
|
||||||| |
|
|
| T |
5172921 |
atccttg |
5172915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 4842404 - 4842610
Alignment:
| Q |
1 |
atattgataagaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
4842404 |
atattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttctaagaatgagggacttcaattgaaatttaggaaaccac |
4842503 |
T |
|
| Q |
101 |
-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| | |||||||| | |||||||||||| || | | |||||||| |
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|
| T |
4842504 |
tttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaagattggagtgattagccaaattgataagtgaaaatg |
4842603 |
T |
|
| Q |
200 |
atccttg |
206 |
Q |
| |
|
||||||| |
|
|
| T |
4842604 |
atccttg |
4842610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 4856881 - 4857084
Alignment:
| Q |
1 |
atattgataagaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
4856881 |
atattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaaaccac |
4856980 |
T |
|
| Q |
101 |
-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatg |
199 |
Q |
| |
|
|||| ||||||||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | ||||||||||||||| |||||||||||| |
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|
| T |
4856981 |
tttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtggtcaatgaaaatg |
4857077 |
T |
|
| Q |
200 |
atccttg |
206 |
Q |
| |
|
||||||| |
|
|
| T |
4857078 |
atccttg |
4857084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5182450 - 5182247
Alignment:
| Q |
1 |
atattgataagaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
5182450 |
atattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttgggaaaccac |
5182351 |
T |
|
| Q |
101 |
-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatg |
199 |
Q |
| |
|
|||| ||||||||||||||| | |||||| ||||||| || ||||||||||||| | ||||||| | |||||||||||||||||||||||||||| |
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|
| T |
5182350 |
tttgtcttttcagtttcaatgagaactcca---ctgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtgctcaatgaaaatg |
5182254 |
T |
|
| Q |
200 |
atccttg |
206 |
Q |
| |
|
||||||| |
|
|
| T |
5182253 |
atccttg |
5182247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 5214010 - 5213807
Alignment:
| Q |
1 |
atattgataagaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| || |||||| |
|
|
| T |
5214010 |
atattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaatgagtgtcttcaattgaaatttgggtaaccac |
5213911 |
T |
|
| Q |
101 |
-ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatg |
199 |
Q |
| |
|
|||| |||||||||||||||| | | ||| ||| ||| ||||||||||||||| | | |||||| | |||||||||||||||||||||||||||| |
|
|
| T |
5213910 |
tttgtcttttcagtttcaatgtttgcaccaatgc---tttgtgatgaaatatatagatgctggagattggagtgattagccaaagtgctcaatgaaaatg |
5213814 |
T |
|
| Q |
200 |
atccttg |
206 |
Q |
| |
|
||||||| |
|
|
| T |
5213813 |
atccttg |
5213807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 7142381 - 7142256
Alignment:
| Q |
4 |
ttgataagaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttaggaaaccac-tt |
102 |
Q |
| |
|
|||||| |||| |||| ||||||||||| |||||| |||| ||||| ||||||||||| ||| || |||| | | ||||||| ||||||||||| || |
|
|
| T |
7142381 |
ttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaatttttaa-cataagtgtatgtagttgaaatctaggaaaccacttt |
7142283 |
T |
|
| Q |
103 |
gttttttcagtttcaatgtgtactcca |
129 |
Q |
| |
|
|| ||||||||||||| |||||||||| |
|
|
| T |
7142282 |
gtattttcagtttcaacgtgtactcca |
7142256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 5202885 - 5202783
Alignment:
| Q |
101 |
ttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatatagaacccgaagattgaaatgattagccaaagtgctcaatgaaaatga |
200 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||| | | || |||||||||||| || |||| |||| ||||||||||||||||| | |||||||| |
|
|
| T |
5202885 |
ttgttttttaagtttcaatgtgttctccaatgctttct---gaggaaatatatagatcctgaagcgtgaagtgattagccaaagtgcttactgaaaatgg |
5202789 |
T |
|
| Q |
201 |
tccttg |
206 |
Q |
| |
|
|||||| |
|
|
| T |
5202788 |
tccttg |
5202783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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