View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14665_high_5 (Length: 298)
Name: NF14665_high_5
Description: NF14665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14665_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 38548125 - 38548402
Alignment:
| Q |
1 |
gtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattggaggcaaga |
100 |
Q |
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| T |
38548125 |
gtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattggaggcaaga |
38548224 |
T |
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| Q |
101 |
tttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaaccacatctc |
200 |
Q |
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| T |
38548225 |
tttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaaccacatctc |
38548324 |
T |
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| Q |
201 |
tcccagataggactcatctcttcttcatctaataaataaaagctagttgattaattgaatggatccatgtgataatgatat |
281 |
Q |
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| T |
38548325 |
tcccagataggactcatc---tcttcatctaataaataaaagctagttgattaattgaatggatccatgtgataatgatat |
38548402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 38556224 - 38556502
Alignment:
| Q |
1 |
gtggatatgaagcaacaactgatagggacattgctttggtgaataagtcttgtgactttgtgaaagatgaacactatgtgccaccaaattggaggcaag- |
99 |
Q |
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| T |
38556224 |
gtggatatgaagcaaccactaatagggacattgctttggtgaataaggcttgtgactttgtgaaagatgagcactctgtgccaccaaattggaggcaaat |
38556323 |
T |
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| Q |
100 |
atttgaacagaaatatggtgaagactgaagatggacgttggatgctggctcatcgcccacaagttgttgatactcatcatgaagaccttgaaccacatct |
199 |
Q |
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| T |
38556324 |
atttgaataggaatatggtgaagactgaagatggacgttgggtgctggctcaacgcccacaacttgctgatactcatcatgaagacattgagcctcatct |
38556423 |
T |
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| Q |
200 |
ctcccagataggactcatctcttcttcatctaataaataaaagctagttgattaattgaatggatccatgtgataatgatat |
281 |
Q |
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| T |
38556424 |
ctcccagataggactcatc---tcttcatctaataaataaaagctagttgattaaatgaatggatccatgtgataatgatat |
38556502 |
T |
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