View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14665_low_6 (Length: 262)
Name: NF14665_low_6
Description: NF14665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14665_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 1629962 - 1630231
Alignment:
| Q |
1 |
atacctaaatttaaatgatccaagcgtaattatttaaaa-----aatgaaattaattgtatg----taagaaagtcacaagtataatttaaatattataa |
91 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||||| | ||||||||||||||||||||||| |
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| T |
1629962 |
atacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagtataatttaaatattataa |
1630061 |
T |
|
| Q |
92 |
acctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctataagtgg |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630062 |
acctatcttattataaaaatttagaacttcaaatgataaaataaaaagagattaaaggagatggaatataactcacctgctgttgcagagctataagtgg |
1630161 |
T |
|
| Q |
192 |
tataacccccttgaacacttctagaacttgttattatggtattttgcataccatcaccaaccagaataat |
261 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
1630162 |
tataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataat |
1630231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 10820736 - 10820598
Alignment:
| Q |
1 |
atacctaaatttaaatgatccaagcgtaattatttaaaaa-atgaaattaattgtatgtaagaaagtcacaagtataatttaaatattataaacctatct |
99 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
10820736 |
atacctaaatttaaatgatccaagagtaattatttaaaaatatgaaagtaattgtaggtaagaaagccacaattataatttaaatattataaacctatct |
10820637 |
T |
|
| Q |
100 |
tattataaaaatttagaacttcaaatgataaaataaaaa |
138 |
Q |
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|| ||||||| |||||||||||||| |||||||||||| |
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| T |
10820636 |
tagtataaaattttagaacttcaaaatataaaataaaaa |
10820598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 1607121 - 1607235
Alignment:
| Q |
147 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataacccccttgaacacttctagaacttgttattatggtattttgcataccatc |
246 |
Q |
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|||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1607121 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1607220 |
T |
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| Q |
247 |
accaaccagaataat |
261 |
Q |
| |
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||||||||| ||||| |
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| T |
1607221 |
accaaccagcataat |
1607235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 147 - 261
Target Start/End: Original strand, 1624142 - 1624256
Alignment:
| Q |
147 |
aggagatggaatataactcacctgctgttgcagagctataagtggtataacccccttgaacacttctagaacttgttattatggtattttgcataccatc |
246 |
Q |
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|
|||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1624142 |
aggaaatgaaatataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatc |
1624241 |
T |
|
| Q |
247 |
accaaccagaataat |
261 |
Q |
| |
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||||||||| ||||| |
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|
| T |
1624242 |
accaaccagcataat |
1624256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 149 - 254
Target Start/End: Complemental strand, 10820160 - 10820055
Alignment:
| Q |
149 |
gagatggaatataactcacctgctgttgcagagctataagtggtataacccccttgaacacttctagaacttgttattatggtattttgcataccatcac |
248 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
10820160 |
gagatggaatataactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcac |
10820061 |
T |
|
| Q |
249 |
caacca |
254 |
Q |
| |
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| |||| |
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|
| T |
10820060 |
cgacca |
10820055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 158 - 254
Target Start/End: Original strand, 18785179 - 18785275
Alignment:
| Q |
158 |
tataactcacctgctgttgcagagctataagtggtataacccccttgaacacttctagaacttgttattatggtattttgcataccatcaccaacca |
254 |
Q |
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||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18785179 |
tataattcacctgctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaacca |
18785275 |
T |
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