View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14665_low_8 (Length: 226)
Name: NF14665_low_8
Description: NF14665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14665_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 12268464 - 12268673
Alignment:
| Q |
1 |
tgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacttacaaagtatgaaa |
100 |
Q |
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| T |
12268464 |
tgagagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaacgtacaaagtatgaaa |
12268563 |
T |
|
| Q |
101 |
cacattttggaaatgttacaaaatcaccatagcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagtagt |
200 |
Q |
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| T |
12268564 |
cacattttggaaatgttacaaaatcaccatatcagtaacaatttaacaaatgttacaaggtgagtgagtgagtgttactaaaagtcacaaatgcagtagt |
12268663 |
T |
|
| Q |
201 |
ggctacccat |
210 |
Q |
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|||||||||| |
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| T |
12268664 |
ggctacccat |
12268673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 12270163 - 12270225
Alignment:
| Q |
164 |
gtgagtgagtgttactaaaagtcacaaatgcagtagtggctacccatccccccatatcaatat |
226 |
Q |
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| T |
12270163 |
gtgagtaagtgttacaaaaagtcataaatgtagtagtggctaccaatcaccccatataaatat |
12270225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 17032022 - 17032100
Alignment:
| Q |
4 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
84 |
Q |
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| T |
17032022 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17032100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 17562458 - 17562536
Alignment:
| Q |
4 |
gagaaatttaaagagttagaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaagattgttacaa |
84 |
Q |
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| T |
17562458 |
gagaaatttaaa-agttagaaaattgaaatgtattttaaaaggcaaattataaa-cactaataactaaaagagagttacaa |
17562536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 17030627 - 17030575
Alignment:
| Q |
22 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
75 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
17030627 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17030575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 17561063 - 17561011
Alignment:
| Q |
22 |
gaaaattgaaatgtaatttaaaaggaaaattataaagcactaataacaaaaaga |
75 |
Q |
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||||| ||||||||| |||||||||||||||||||| |||||||||| |||||| |
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| T |
17561063 |
gaaaactgaaatgtattttaaaaggaaaattataaa-cactaataactaaaaga |
17561011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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