View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14666_high_1 (Length: 644)

Name: NF14666_high_1
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14666_high_1
NF14666_high_1
[»] chr2 (6 HSPs)
chr2 (1-556)||(44243760-44244333)
chr2 (585-644)||(44243696-44243760)
chr2 (357-397)||(17117405-17117445)
chr2 (359-397)||(15457768-15457806)
chr2 (359-397)||(21746991-21747029)
chr2 (357-397)||(38985469-38985508)
[»] chr7 (2 HSPs)
chr7 (360-397)||(1366276-1366313)
chr7 (357-397)||(26282292-26282332)
[»] chr8 (1 HSPs)
chr8 (357-397)||(34523714-34523754)
[»] chr5 (5 HSPs)
chr5 (357-397)||(43511885-43511925)
chr5 (359-397)||(3349489-3349527)
chr5 (360-397)||(10591035-10591072)
chr5 (356-393)||(20976245-20976282)
chr5 (357-398)||(41612987-41613028)
[»] chr6 (5 HSPs)
chr6 (357-396)||(1690478-1690517)
chr6 (357-394)||(29308230-29308267)
chr6 (357-397)||(1092801-1092841)
chr6 (359-395)||(7926409-7926445)
chr6 (357-397)||(31861251-31861291)
[»] chr1 (2 HSPs)
chr1 (35-70)||(12541378-12541413)
chr1 (437-489)||(42138109-42138161)
[»] chr4 (1 HSPs)
chr4 (357-397)||(51066071-51066111)
[»] chr3 (1 HSPs)
chr3 (357-397)||(48626789-48626829)


Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 44244333 - 44243760
Alignment:
Q  1 tgaaattgcagccattcagacagaagtcattaatcaaaaatatgaatgagaaactcaatcctagattgtaatatggtctgttaaaaatcaataagatcat 100  Q
    ||||||||||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44244333 tgaaattgcagccatacagactgaagtcattaaccaaaaagatgaatgagaaactcaatcctagattgtaatatggtctattaaaaatcaataagatcat 44244234  T
Q  101 atataggacaagttacttaccaacttaatattccacctaagaataagattcataaaattgaccggtaatgcacaagccatagattagacgattatatgct 200  Q
    ||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44244233 atacaggacaagttatttaccaacttaatattccacctaagaataagatccataaaattgaccggtaatgcaaaagccatagattagacgattatatgct 44244134  T
Q  201 tcacgaccacgcctgatctttttaacaagcatttcagaaattaattcaagggctagcactgcagagctcagatatgactgtattatacaacaaactgaca 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||    
T  44244133 tcacgaccacgcctgatctttttaacaagcatttcagaaaataattcaagggctatctctgcagagcttagatatgactgtattatacaacaaactgaca 44244034  T
Q  301 ttaacattgtctctagttccaaaatcaccatgtggtgcatgtgtggacaagtatatggcc-tattttaaatagagagctgagccttctatt--------- 390  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| || |||||||||             
T  44244033 ttaatattgtctatagttccaaaatcaccatgtggtgcctgtgtggacaagtatatggccttattttaaatagagagccgaaccttctattttataggaa 44243934  T
Q  391 --------tcataggatgggtgatatgacccgatcatcttgactaactgagttaagcaaacatctataaataatctatcatataatatatttatgactaa 482  Q
            ||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||    
T  44243933 agccctcatcacaggatgggtgatatgacctgatcatcttgactaactgagttgagcaaacatctataaataatctataatataatatatttatgattaa 44243834  T
Q  483 tttgaatattttgaagtattttttatcccaagattccgaagtctaaaaccctttctttgactacttagccttgt 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44243833 tttgaatattttgaagtattttttatcccaagattccgaagtctaaaaccctatctttgactacttagccttgt 44243760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 585 - 644
Target Start/End: Complemental strand, 44243760 - 44243696
Alignment:
Q  585 tttatgaaatttgaaatctgtcatgtggcttg---gaca--ttattatatggactggttggatga 644  Q
    ||||||||||||| ||||||||||||||||||   ||||  ||||||||||||||||||||||||    
T  44243760 tttatgaaatttggaatctgtcatgtggcttggttgacaatttattatatggactggttggatga 44243696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 17117445 - 17117405
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  17117445 ggcctattttaaatagagagccgagcctcctatttcatagg 17117405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 15457768 - 15457806
Alignment:
Q  359 cctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  15457768 cctattttaaatagagagccgagcctcctatttcatagg 15457806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 21747029 - 21746991
Alignment:
Q  359 cctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  21747029 cctattttaaatagagagccgagcctcctatttcatagg 21746991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 38985508 - 38985469
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  38985508 ggcctattttaaatagagagccgagcc-tctatttcatagg 38985469  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 1366276 - 1366313
Alignment:
Q  360 ctattttaaatagagagctgagccttctatttcatagg 397  Q
    |||||||||||||||||| |||||||||||||||||||    
T  1366276 ctattttaaatagagagccgagccttctatttcatagg 1366313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 26282332 - 26282292
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagg 397  Q
    |||||||||||||||| |||| |||||| ||||||||||||    
T  26282332 ggcctattttaaatagtgagccgagcctcctatttcatagg 26282292  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 34523754 - 34523714
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  34523754 ggcctattttaaatagagagccgagcctcctatttcatagg 34523714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 43511885 - 43511925
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  43511885 ggcctattttaaatagagagccgagcctcctatttcatagg 43511925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 397
Target Start/End: Complemental strand, 3349527 - 3349489
Alignment:
Q  359 cctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||| |||||| ||||||||||||    
T  3349527 cctattttaaatagagagccgagcctcctatttcatagg 3349489  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 397
Target Start/End: Complemental strand, 10591072 - 10591035
Alignment:
Q  360 ctattttaaatagagagctgagccttctatttcatagg 397  Q
    |||||||||||||||||| |||||| ||||||||||||    
T  10591072 ctattttaaatagagagccgagcctcctatttcatagg 10591035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 20976245 - 20976282
Alignment:
Q  356 tggcctattttaaatagagagctgagccttctatttca 393  Q
    |||||||||||||||||||||| |||||| ||||||||    
T  20976245 tggcctattttaaatagagagccgagcctcctatttca 20976282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 398
Target Start/End: Original strand, 41612987 - 41613028
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagga 398  Q
    ||||||||||||| ||||||| |||||| |||||||||||||    
T  41612987 ggcctattttaaaaagagagcagagcctcctatttcatagga 41613028  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 357 - 396
Target Start/End: Complemental strand, 1690517 - 1690478
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatag 396  Q
    ||||||||||||||||||||| |||||| |||||||||||    
T  1690517 ggcctattttaaatagagagccgagcctcctatttcatag 1690478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 29308267 - 29308230
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcat 394  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  29308267 ggcctattttaaatagagagccgagcctcctatttcat 29308230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 1092841 - 1092801
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  1092841 ggcctattttaaatagagaaccgagcctcctatttcatagg 1092801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 7926409 - 7926445
Alignment:
Q  359 cctattttaaatagagagctgagccttctatttcata 395  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  7926409 cctattttaaataaagagttgagccttctatttcata 7926445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 31861251 - 31861291
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||||  |||||| ||||||||||||    
T  31861251 ggcctattttaaatagagagtcgagcctcctatttcatagg 31861291  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 12541413 - 12541378
Alignment:
Q  35 caaaaatatgaatgagaaactcaatcctagattgta 70  Q
    |||||| |||||||||||||||||||||||||||||    
T  12541413 caaaaacatgaatgagaaactcaatcctagattgta 12541378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 437 - 489
Target Start/End: Original strand, 42138109 - 42138161
Alignment:
Q  437 agcaaacatctataaataatctatcatataatatatttatgactaatttgaat 489  Q
    ||||||||||||||| |||| |||||||| |||||||||  ||||| ||||||    
T  42138109 agcaaacatctataattaatatatcatatcatatatttacaactaaattgaat 42138161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 51066111 - 51066071
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  51066111 ggcctattttaaatagagaaccgagcctcctatttcatagg 51066071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 357 - 397
Target Start/End: Complemental strand, 48626829 - 48626789
Alignment:
Q  357 ggcctattttaaatagagagctgagccttctatttcatagg 397  Q
    ||||||||||||||||||| | |||||| ||||||||||||    
T  48626829 ggcctattttaaatagagaaccgagcctcctatttcatagg 48626789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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