View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14666_high_16 (Length: 229)

Name: NF14666_high_16
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14666_high_16
NF14666_high_16
[»] chr8 (5 HSPs)
chr8 (14-211)||(478974-479171)
chr8 (14-220)||(7126284-7126490)
chr8 (14-214)||(43318947-43319132)
chr8 (14-220)||(8451968-8452174)
chr8 (14-215)||(40589617-40589818)
[»] chr4 (10 HSPs)
chr4 (14-215)||(28425261-28425462)
chr4 (14-220)||(26423082-26423288)
chr4 (14-215)||(55734076-55734277)
chr4 (14-215)||(49950389-49950590)
chr4 (14-215)||(56063068-56063269)
chr4 (14-215)||(28538703-28538905)
chr4 (14-215)||(51260449-51260650)
chr4 (30-211)||(2063842-2064023)
chr4 (25-150)||(40360594-40360719)
chr4 (18-111)||(2064026-2064119)
[»] chr7 (3 HSPs)
chr7 (14-194)||(3746337-3746517)
chr7 (14-215)||(16096405-16096606)
chr7 (14-78)||(9329521-9329585)
[»] chr6 (4 HSPs)
chr6 (14-215)||(15606921-15607122)
chr6 (14-220)||(19364856-19365063)
chr6 (14-151)||(29368955-29369092)
chr6 (14-215)||(11732565-11732766)
[»] chr2 (4 HSPs)
chr2 (14-215)||(87423-87624)
chr2 (14-114)||(39826775-39826875)
chr2 (109-215)||(39828942-39829048)
chr2 (14-93)||(87747-87826)
[»] chr1 (1 HSPs)
chr1 (14-215)||(5608387-5608588)
[»] chr5 (3 HSPs)
chr5 (14-220)||(8387142-8387348)
chr5 (14-215)||(20204026-20204228)
chr5 (15-69)||(30223719-30223773)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 478974 - 479171
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  478974 atcattctgaacttccacaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 479073  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcatt 211  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  479074 tcgttagatatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcatt 479171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 7126490 - 7126284
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||||||| ||||| ||||||||||||     
T  7126490 atcattctaaacttccgcaaacaatggtgtgtcgagaatagcttgcaccatatcatcttaaaacaaagattcaatcttatcaatgttccaaactcgttca 7126391  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| |||||||||||||||| ||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7126390 tcgtcagctatcaaatcagacccacgcaaactatgtacatcttggctttgtggggattgaatccagctaccgtgaacacctcgaacccacggatcattca 7126291  T
Q  214 tctcact 220  Q
    || ||||    
T  7126290 tcacact 7126284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 43318947 - 43319132
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||              |||| ||||||||||||||||||||||||||||||||||||    
T  43318947 atcattatgaacttccgcaaacagtggtgtgtcgagaatagcttg--------------aaaatagagattcaatcttattaatgtcccaaactcgttcc 43319032  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  43319033 tcgttagctatcaaatcagacacacacaaactatgcacaccttggctttgt-gggattgaatccagctgccgtgaacacctcgaacccatggatcattca 43319131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 8451968 - 8452174
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||| |||||||||||||| ||| |||||||||||||||    
T  8451968 atcattctgaacttccgaaaacagtggtgtgtcaagaatagcttgcaccatatcatctgtaaacaaagattcaatcttatcaatatcccaaactcgttcc 8452067  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    || | |||||||||||||||||||  |||| |||||||| | ||||||||||||||||||||||| || || ||||||||||||| ||||| ||||||||    
T  8452068 tcatcagctatcaaatcagacacatgcaaattatgcacatcgtggctttgtggggattgaatccaactgccatgaacacctcgaatccatgaatcattca 8452167  T
Q  214 tctcact 220  Q
    || ||||    
T  8452168 tcacact 8452174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 40589617 - 40589818
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| |||||||||  |||||||||||||||||||||||||||   |   |||| |  ||||| |||||||||||||| ||| ||||||||||| | |    
T  40589617 atcattatgaacttccataaacagtggtgtgtcgagaatagcttgattctcgtcatctcgaaacaaagattcaatcttatcaatatcccaaactcgattc 40589716  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| | |||||||||||||||||| ||| ||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  40589717 tcgtcatctatcaaatcagacacactcaagctatgcacaccatgactttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattca 40589816  T
Q  214 tc 215  Q
    ||    
T  40589817 tc 40589818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 28425462 - 28425261
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| |||||||||||||||||||    
T  28425462 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatcggaaaacaaagattcaatcttatcaatgtcccaaactcgttcc 28425363  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| |||||||||||||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28425362 tcgtcagctatcaaatcagacacacgcaaactatgcacatcttggccttgtggggattgaatccagctaccgtgaacacctcgaacccacggatcattca 28425263  T
Q  214 tc 215  Q
    ||    
T  28425262 tc 28425261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 26423082 - 26423288
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||    
T  26423082 atcattctgaacttccgcaaacagtggtgtatcgagaatagtttgcaccatatcatctgaaaacaaagattcaatcttatcaatgtcccaaactctttcc 26423181  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| | |||||||||||||||||||||||||||||||    |||| |||||||||||||||||| |||||||||||||||||||| || ||||||||||    
T  26423182 tcgtcaactatcaaatcagacacacacaaactatgcacgtattggccttgtggggattgaatccaactaccgtgaacacctcgaactcacggatcattca 26423281  T
Q  214 tctcact 220  Q
    || ||||    
T  26423282 tcacact 26423288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 55734277 - 55734076
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| ||| |||||||||||||||    
T  55734277 atcattttgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatctggaaacaaagattcaatcttatcaatatcccaaactcgttcc 55734178  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
     ||  | |||||||||| |||||||  |||||||| ||||| || |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  55734177 acgacaactatcaaatcggacacacttaaactatgtacaccttgactttgtggggattgaatccagctaccttgaacacctcgtacccatggatcattca 55734078  T
Q  214 tc 215  Q
    ||    
T  55734077 tc 55734076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 49950590 - 49950389
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| || ||||||  ||||||||||||||||||||||| ||||||||||||||  | ||||| |||||||||||||||||| |||||||| |||||     
T  49950590 atcattatggacttccctaaacagtggtgtgtcgagaatagtttgcaccatatcatcaggaaacaaagattcaatcttattaatatcccaaacccgttcg 49950491  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    ||| || |||||||||||||||||  ||||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49950490 tcggtaactatcaaatcagacacattcaaactatgcacatctttgctttgtggggattgaatccagctaccttgaacacctcgaacccatggatcattca 49950391  T
Q  214 tc 215  Q
    ||    
T  49950390 tc 49950389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 56063269 - 56063068
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| ||||||||| || | ||||| |||||||||||||||||||||||||||| || ||||| |||||||| ||||| ||| |||||||||||||||    
T  56063269 atcattatgaacttccacagatagtggcgtgtcgagaatagcttgcaccatatcatctggaaacaaagattcaagcttatcaatatcccaaactcgttcc 56063170  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| | |||||||||||||||||| ||||||||  ||||| |||||||||||||||||||||||| | ||  ||  |||||||||||||||||||||||    
T  56063169 tcgtcaactatcaaatcagacacacgcaaactatagacaccttggctttgtggggattgaatccagtttccacgagtacctcgaacccatggatcattca 56063070  T
Q  214 tc 215  Q
    ||    
T  56063069 tc 56063068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 28538703 - 28538905
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcat-ttgaaaacagagattcaatcttattaatgtcccaaactcgttc 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |  |||||| | |||||||||||| ||| |||||||| |||||    
T  28538703 atcattctgaacttccgcaaacagtggtgtgtcgagagtagcttgcaccatatcatctaaaaaacaaaaattcaatcttatcaatatcccaaacccgttc 28538802  T
Q  113 ctcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattc 212  Q
    ||||  |||||| ||||||||||||| |||||||| |||| | || |||||||||||||||||| |||  ||  | ||||||||||||||||||||||||    
T  28538803 ctcgacagctattaaatcagacacactcaaactatacacatcttgactttgtggggattgaatctagcatccacggacacctcgaacccatggatcattc 28538902  T
Q  213 atc 215  Q
    |||    
T  28538903 atc 28538905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 51260449 - 51260650
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| |||||||||||||| |||||  ||||||||||||||||||||||||||| || ||||| |||||||| ||||| ||| || ||||||||||||    
T  51260449 atcattatgaacttccgcaaatagtggcctgtcgagaatagcttgcaccatatcatctggaaacaaagattcaagcttatcaatatctcaaactcgttcc 51260548  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| | ||||||||||| |||||  ||||||||| ||||| | |||||||||||||||||||||| | || |||  |||||||||||||||||||||||    
T  51260549 tcgtcaactatcaaatcaaacacatgcaaactatggacaccttcgctttgtggggattgaatccagtttccatgagtacctcgaacccatggatcattca 51260648  T
Q  214 tc 215  Q
    ||    
T  51260649 tc 51260650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 211
Target Start/End: Complemental strand, 2064023 - 2063842
Alignment:
Q  30 gcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcctcgttagctatcaaat 129  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||| |||||||| ||||| ||    ||||||||      
T  2064023 gcaaatagtggtgtgtcgagaatagcttgcaccatatcatctgaaaacaaagatttaatcttattaatatcccaaacccgttcatcagatgctatcaagg 2063924  T
Q  130 cagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcatt 211  Q
    |||||||||  |||||| ||| ||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  2063923 cagacacactaaaactaggcaaaccttggctttgtggggattggatccaactaccttgaacacctcgaacccatggatcatt 2063842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 150
Target Start/End: Complemental strand, 40360719 - 40360594
Alignment:
Q  25 cttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcctcgttagctat 124  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||| |||||||||||||||||| |||| ||||||    
T  40360719 cttccgcaaacaatggtgtgtcgagaatagcttgcaccatatcatctgaaaacaaagatgcaatcttatcaatgtcccaaactcgttcttcgtcagctat 40360620  T
Q  125 caaatcagacacacacaaactatgca 150  Q
    |||||||||||||| |||||||||||    
T  40360619 caaatcagacacacgcaaactatgca 40360594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 2064119 - 2064026
Alignment:
Q  18 ttctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgtt 111  Q
    ||||||||||| ||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||| |||||||| ||| |||||||| ||||    
T  2064119 ttctgaacttctgcaaatagtggtgtgtcgagaatagcctgcaccatatcatctgaaaacaaagatttaatcttatcaatatcccaaacccgtt 2064026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 194
Target Start/End: Complemental strand, 3746517 - 3746337
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||||||||||||    
T  3746517 atcattctgaacttccacaaacaatggtgtgtcgagaatagcttgcaccatatcatctgaaaacaaagattcaatcttatcaatgtctcaaactcgttcc 3746418  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacct 194  Q
    |||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||    
T  3746417 tcgtcagctatcaaatcagacacacgcaaactatgcacaccttgactttgtggggattgaatccagctaccgtggacacct 3746337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 16096606 - 16096405
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |  ||||| |||||||||||||| ||| |||||||||||||||    
T  16096606 atcattctgaactttcgtaaacaatggtgtgtcgagaatagcttgcaccatatcatctagaaacaaagattcaatcttatcaatatcccaaactcgttcc 16096507  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||  ||||||||||||||| |||  |||||| |||||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||    
T  16096506 tcggcagctatcaaatcagatacattcaaactttgcacaccttggctttgtggagattgaattcagctaccttgaacacctcgaacccatggatctttca 16096407  T
Q  214 tc 215  Q
    ||    
T  16096406 tc 16096405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 9329521 - 9329585
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaaca 78  Q
    ||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| ||||||||    
T  9329521 atcattctgaacttccgcataaagtagtgtgtcgagaatagcttgcaccatatcatctgaaaaca 9329585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 15606921 - 15607122
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || ||||| |||||||| ||||| ||| |||||||| ||||||    
T  15606921 atcattctgaacttccgcaaacagtggggtgtcgagaataggttgcaccatatcatctggaaacaaagattcaagcttatcaatatcccaaacccgttcc 15607020  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| | ||||||||| |||||||||||||||||||| | | ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15607021 tcgtcaactatcaaataagacacacacaaactatgcaaaacttggatttgtggggattgaatccagctaccatgaacacctcgaacccatggatcattca 15607120  T
Q  214 tc 215  Q
    ||    
T  15607121 tc 15607122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 19364856 - 19365063
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||     ||||| |||||||||||||| ||| |||||||||||||||    
T  19364856 atcattttgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcaaccagaaacaaagattcaatcttatcaatatcccaaactcgttcc 19364955  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgt-ggggattgaatccagctaccgtgaacacctcgaacccatggatcattc 212  Q
    |||  |||||||||||||||||||| |||| |||||||||| ||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||    
T  19364956 tcgacagctatcaaatcagacacactcaaattatgcacaccttggctttgtgggggattgaatccaactaccttgaacacctcgaaccaatggatcattc 19365055  T
Q  213 atctcact 220  Q
    ||| ||||    
T  19365056 atcacact 19365063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 29368955 - 29369092
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||| | | || ||||||||||||    
T  29368955 atcattctgaacatccgcaaacaatggtgtgtcgagaatagcttgcaccatatcatctggaaacaaagattcaatcttatcattatctcaaactcgttcc 29369054  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcac 151  Q
    ||   || |||||||||||| || | ||||||||||||    
T  29369055 tcaacagttatcaaatcagatacgctcaaactatgcac 29369092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 11732565 - 11732766
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||||||| ||||||||||| ||| ||||||| |||||||||| ||||||| ||||||||  | | ||| |||||||  |||  ||||||| ||||||    
T  11732565 atcattctgaccttccgcaaaccgtgatgtgtcgggaatagcttgaaccatattatttgaaagaaaatatttaatcttagcaataccccaaacccgttcc 11732664  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    ||   | |||||||||||||||||   ||| |||||||| | || |||| ||||||||||||||||| |||  |||||||||||||||||  ||||||||    
T  11732665 tcaacaactatcaaatcagacacaattaaattatgcacaacttgcctttatggggattgaatccagcaacctagaacacctcgaacccattaatcattca 11732764  T
Q  214 tc 215  Q
    ||    
T  11732765 tc 11732766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 87624 - 87423
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| ||  |||| ||||||||||||||  |  |||||||| || |||    
T  87624 atcattatgaacttccgcaaacaatggtgtatcgagaatagcttgcaccatatcatctgggaacaaagattcaatcttatcgacatcccaaacacgatcc 87525  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| |||||||||||||||||||| |||  |||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  87524 tcgtcagctatcaaatcagacacactcaagatatgcacaccttgactttgtggggattgaatacagctaccttgaacacctcgaacccatggatcattca 87425  T
Q  214 tc 215  Q
    ||    
T  87424 tc 87423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 39826775 - 39826875
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  39826775 atcattttgaacttccgcaaacagtggtgtgtcaagaatagcttgcaccatatcatctgaaaacaaagattcaatcttatcaatgtcccaaactcgttcc 39826874  T
Q  114 t 114  Q
    |    
T  39826875 t 39826875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 39828942 - 39829048
Alignment:
Q  109 gttcctcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatc 208  Q
    ||||||||| |||||||||||||||||||   |||||||||||| | || | |||||||||||||||||||||||||||||||||||||||||| |||||    
T  39828942 gttcctcgtcagctatcaaatcagacacaggtaaactatgcacatcttgaccttgtggggattgaatccagctaccgtgaacacctcgaacccacggatc 39829041  T
Q  209 attcatc 215  Q
    |||||||    
T  39829042 attcatc 39829048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 87826 - 87747
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttat 93  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| ||  |||| ||||||||||||||    
T  87826 atcattatgaacttccgcaaacaatggtgtatcgagaatagcttgcaccatatcatctgggaacaaagattcaatcttat 87747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 5608588 - 5608387
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| |||||||||||||| ||  | ||||||||| |||    
T  5608588 atcattctgaacttccgcaaacagtggtgtgtcgagaataacttgcaccatatcatctggaaacaaagattcaatcttatcaacattccaaactcgatcc 5608489  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| || |||||||||| ||||||  |  |||||||||||||| |||||||||||||||||| ||||||| ||||| || ||||||||||| |||||||    
T  5608488 tcgtcagttatcaaatcaaacacacttaggctatgcacaccctgactttgtggggattgaatctagctaccttgaactccacgaacccatgggtcattca 5608389  T
Q  214 tc 215  Q
    ||    
T  5608388 tc 5608387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 9e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 8387348 - 8387142
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| || ||||| |||||||| ||||| ||| |||||||| ||||||    
T  8387348 atcattatgaacttccgcaaatagtggcgtgtcgagaatagcttgcaccatatcatctggaaacaaagattcaagcttatcaatatcccaaacccgttcc 8387249  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcattca 213  Q
    |||| | |||||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||  |  |  ||  |||||||||||||||||||||||    
T  8387248 tcgtcaactatcaaatcagacacacgcaaactacgaacaccttggctttgtggggattgaatccacttttcacgagtacctcgaacccatggatcattca 8387149  T
Q  214 tctcact 220  Q
    || ||||    
T  8387148 tcacact 8387142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 20204228 - 20204026
Alignment:
Q  14 atcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcatttgaaaacagagattcaatcttattaatgtcccaaactcgttcc 113  Q
    |||||| |||||||||||||||| | ||||| |||||||||||| ||||||||||| || ||| |||||||||||||||| ||| ||||||||| |||||    
T  20204228 atcattttgaacttccgcaaacaatagtgtgccgagaatagcttacaccatatcatctggaaatagagattcaatcttatcaatatcccaaacttgttcc 20204129  T
Q  114 tcgttagctatcaaatcagacacacacaaactatgcacaccctggctttgt-ggggattgaatccagctaccgtgaacacctcgaacccatggatcattc 212  Q
    |||  |||||||||||||||||||| ||| |||||| |||| || |||||| ||||||| |||||| ||||| | |||||||| ||||||||||||||||    
T  20204128 tcggcagctatcaaatcagacacactcaagctatgcgcaccttgactttgtgggggattaaatccaactaccttcaacacctctaacccatggatcattc 20204029  T
Q  213 atc 215  Q
    |||    
T  20204028 atc 20204026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 30223719 - 30223773
Alignment:
Q  15 tcattctgaacttccgcaaacagtggtgtgtcgagaatagcttgcaccatatcat 69  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  30223719 tcattctgaacttccgcaaacaatggtgtgttgagaatagcttgcaccatctcat 30223773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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