View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14666_low_10 (Length: 361)
Name: NF14666_low_10
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14666_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 231 - 336
Target Start/End: Complemental strand, 29166007 - 29165902
Alignment:
| Q |
231 |
attaccctgtataccatatt-acatgatactgtacaaccatagctaccataattacattatttttaacaagctccatcactttagagcatataaatcata |
329 |
Q |
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| T |
29166007 |
attaccctatatactatatttacatgatgctgtacaaccatagctaccataattacattatttttaacaagct-catcactttagagcatataaatcata |
29165909 |
T |
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| Q |
330 |
tgcatca |
336 |
Q |
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||||||| |
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| T |
29165908 |
tgcatca |
29165902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 76 - 198
Target Start/End: Complemental strand, 29167846 - 29167725
Alignment:
| Q |
76 |
ttttcatattgattttgtcttgcgtttcattcatgaaatgcttgcatataaagcatctcaatataaccggaacaagcgtattcagcatttgcctgataac |
175 |
Q |
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|||||||||| ||| | |||||| |||||||||| || |||||||||||| |||||||||||||||||||||| || ||||||| ||||||||||||||| |
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| T |
29167846 |
ttttcatattcattct-tcttgcttttcattcattaagtgcttgcatatatagcatctcaatataaccggaaccagggtattcaacatttgcctgataac |
29167748 |
T |
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| Q |
176 |
aatgctaaatgaattgtaaaaca |
198 |
Q |
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| T |
29167747 |
aatgctaaaggaattgtaaaaca |
29167725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 32 - 184
Target Start/End: Complemental strand, 29169803 - 29169661
Alignment:
| Q |
32 |
tgcaaaggaaagaaatagtaacatgctaagggaaccctaagcccttttcatattgattttgtcttgcgtttcattcatgaaatgcttgcatataaagcat |
131 |
Q |
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|||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||||||||||| |||||||||| || ||||||| |||| || || |
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| T |
29169803 |
tgcaaaggaaagaaatagtaacttggtaagggaaaactaagcc-ttttcatattgattttgtcttgcttttcattcatcaagtgcttgcgtatatagtat |
29169705 |
T |
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| Q |
132 |
ctcaatataaccggaacaagcgtattcagcatttgcctgataacaatgctaaa |
184 |
Q |
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| T |
29169704 |
ctcaatat---------aagcgtattcagcatttgcctgataacaatgctaaa |
29169661 |
T |
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