View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14666_low_13 (Length: 327)
Name: NF14666_low_13
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14666_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 22 - 321
Target Start/End: Original strand, 44243420 - 44243719
Alignment:
| Q |
22 |
tggagttcgaatccggccaccaccaaacnnnnnnnnncctatcaagatttaaaaggatcctacaattctttacattttaatattgtaaggaatattatta |
121 |
Q |
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| T |
44243420 |
tggagttcgaatccggccaccactaaacaaaaaaaaacctatcaaaatttaaaagggtcctacaattctttatattttaatattgtaaggaatatcatta |
44243519 |
T |
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| Q |
122 |
tgagtcgagattcaatttttaaattttgtaatacataaaagaatatactagtaattgaagacccaacaactacaaatgcagcaattcctacaaaatcatc |
221 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44243520 |
tgagtcgagattcaatttttatattttgtaatacataaaagaatatactagtaattgaagacccaacaactacaaatgcagcaattcctacaaaatcatc |
44243619 |
T |
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| Q |
222 |
cataaccaaagtatcttctagtaaactctttcactgcctcattgctttcaattcaacttattacatctctaaattgtcatccaaccagtccatagaataa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44243620 |
cataaccaaagtatcttctagtaaactctttcactgcctcattgctttcaattcaacttattacatctctaaattgtcatccaaccagtccatataataa |
44243719 |
T |
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