View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14666_low_16 (Length: 246)
Name: NF14666_low_16
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14666_low_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 10406000 - 10406222
Alignment:
| Q |
18 |
ctacaccatcgagagatgaatgtttctggtacacgtccatgttgtaacagggaagatgaatctattcttcattgcttcatccattgtccaagagtggttg |
117 |
Q |
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| T |
10406000 |
ctacaccatcgagagatgaatgtttctggtacacgtccatgttgtaacggggaagatgaatctattcttcattgcttcatccattgtccacgagtggttg |
10406099 |
T |
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| Q |
118 |
cagtgttggtttggatgtggattctctaacgagtcttcattgtgcactaataatctctcgagttatatgagagatttgaagtctcgcccctatcatattg |
217 |
Q |
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| T |
10406100 |
cagtgttggtt------tggattctctgacgtgtcttcattgtgcgctaataatctctcgagtaatatgagagatagcaagtttcgcccctatcatattg |
10406193 |
T |
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| Q |
218 |
tggaacctacagtgcactcacaacaagct |
246 |
Q |
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| T |
10406194 |
tggaacctacagtgcactcacaacaagct |
10406222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 65
Target Start/End: Original strand, 10402330 - 10402359
Alignment:
| Q |
36 |
aatgtttctggtacacgtccatgttgtaac |
65 |
Q |
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| T |
10402330 |
aatgtttctggtacacgtccatgttgtaac |
10402359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 192
Target Start/End: Original strand, 32331340 - 32331510
Alignment:
| Q |
21 |
caccatcgagagatgaatgtttctggtacacgtccatgttgtaacagggaagatgaatctattcttcattgcttcatccattgtccaagagtggttgcag |
120 |
Q |
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| T |
32331340 |
caccatcgaggggtgaatgtttctgctatatgtccatgttgtaatcggaaagatgaatctattcctcattgcctcatcctttgtccgcgagctgttgcag |
32331439 |
T |
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| Q |
121 |
tgttggtttggatgtggattctctaacgagtcttcattgtgcactaataatctctcgagttatatgagagat |
192 |
Q |
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| T |
32331440 |
tg-tggtctggatgtgaattccctaacgtgtcttctttgtgcattaataatccttcgagtaatatgagagat |
32331510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 192
Target Start/End: Original strand, 37501657 - 37501799
Alignment:
| Q |
47 |
tacacgtccatgttgtaacagggaagatgaatctattcttcattgcttcatccattgtccaagagtggttgcagtgttggtttggatgtggattctctaa |
146 |
Q |
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| T |
37501657 |
tacatgtccatgttgtaacgaggaagatgaatatattcttcattgccccatcctttgtccacgagttgttgcagcg-tggtctggatgtggcttccccaa |
37501755 |
T |
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| Q |
147 |
cgagtcttcattgtgcactaataatctctcgagttatatgagagat |
192 |
Q |
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| T |
37501756 |
tgtgtcttcattgtg--ctgacaatctctcgagtaatatgagagat |
37501799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 33928493 - 33928642
Alignment:
| Q |
21 |
caccatcgagagatgaatgtttctggtacacgtccatgttgtaacagggaagatgaatctattcttcattgcttcatccattgtccaagagtggttgcag |
120 |
Q |
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| T |
33928493 |
caccatcgaggggtgaaagtttctgctacatatccatgttgtacgagg-aagatgaatctattcctcattgcctcatcctttgtctgcgagctgttgtaa |
33928591 |
T |
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| Q |
121 |
tgttggtttggatgtggattctctaacgagtcttcattgtgcactaataatc |
172 |
Q |
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| T |
33928592 |
tg-tggtctggatgtggattaccctacgtgtcttcattgtgcgctaataatc |
33928642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 192
Target Start/End: Complemental strand, 32925979 - 32925822
Alignment:
| Q |
34 |
tgaatgtttctggtacacgtccatgttgtaacagggaagatgaatctattcttcattgcttcatccattgtccaagagtggttgcagtgttggtttggat |
133 |
Q |
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| T |
32925979 |
tgaatgtttctactacatgtccatgatgtaacgaggaagatgaatctattcttcattgcctcatcctttgtctgcgagctgttgtagtg-tggtcttgat |
32925881 |
T |
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| Q |
134 |
gtggattctctaacgagtcttcattgtgcactaataatctctcgagttatatgagagat |
192 |
Q |
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| T |
32925880 |
gtagattccctaatgtgtcttcattgcgcgctaataatccttcgagtaatatgaaagat |
32925822 |
T |
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