View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14666_low_17 (Length: 238)
Name: NF14666_low_17
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14666_low_17 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 10193 - 10390
Alignment:
| Q |
18 |
gcatcatgactaaaaataacatttatggctcacaatattcaatctaattcatttctagtgaaattttttgaatctgctcaagggattgagaagtaatgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10193 |
gcatcatgactaaaaataacatttatggctcacaatattcaatctaattcatttctagtgaaattttttgaatctgctcaagggattgagaagtaatgtt |
10292 |
T |
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| Q |
118 |
caaacatcaatttttagacacaggagcctttgttcctaactatttgtagtcaccacatcacaagtaccatcaaacagtaaaaatatcttaacatctat |
215 |
Q |
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| T |
10293 |
caaacatcaatttttagacacaggagcctttgttcctaactatttgtagtcaccacatcacaagtaccatcaaacagtaaaaatatcttaacatctat |
10390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 24114995 - 24115192
Alignment:
| Q |
18 |
gcatcatgactaaaaataacatttatggctcacaatattcaatctaattcatttctagtgaaattttttgaatctgctcaagggattgagaagtaatgtt |
117 |
Q |
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|||| |||||||||| || |||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||||| |
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| T |
24114995 |
gcataatgactaaaattagcatttaaggctcacaatatttaatctaattcatttctagtgaaatattttgaatctgcacaacagattgagcagtaatgtt |
24115094 |
T |
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| Q |
118 |
caaacatcaa--tttttagacacaggagcctttgttcctaactatttgtagtcaccacatcacaagtaccatcaaacagtaaaaatatcttaacatct |
213 |
Q |
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| T |
24115095 |
caaacatcaattttttttgacacaaaagcctttgttcctaactgtgtggagtcaccgcatcataagtaccatcaaacagttacaatatcttaacatct |
24115192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 1955645 - 1955756
Alignment:
| Q |
18 |
gcatcatgactaaaaataacatttatggctcacaatattcaatctaattcatttctagtgaaattttttgaatctgctcaagggattgagaagtaatgtt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| || |
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| T |
1955645 |
gcatcatgactaaaaataacatttatggctcacaatattcaatctaattcatttctagtgaaatattttgaatctgcacaagggattgagaagtaatatt |
1955744 |
T |
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| Q |
118 |
caaacatcaatt |
129 |
Q |
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| T |
1955745 |
caaacatcaatt |
1955756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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