View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14666_low_19 (Length: 236)
Name: NF14666_low_19
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14666_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 102 - 221
Target Start/End: Complemental strand, 38080759 - 38080636
Alignment:
| Q |
102 |
atctgtccctcaaatcatagtttgttttcataagttatcatcgagagagcatatgaaaataaattctctcaagttttcttgaacaatgtgtc------ag |
195 |
Q |
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| T |
38080759 |
atctgtccctcaaatcatagtttgttttcataagttatcatcgagag--catatgaaaataaattctctcaagttttcttgaacaatgtgtcattggtag |
38080662 |
T |
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| Q |
196 |
aacttttaaatcaaatcacttgatta |
221 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38080661 |
aacttttaaatcaaatcacttgatta |
38080636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 51151095 - 51151198
Alignment:
| Q |
1 |
tcgttacacattcaaagatcaaaataactattatgtttatttataataaaaatgtagaaaagttggatgtgtgattatagccacacatagtctctaaaga |
100 |
Q |
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||||||||||||||| || ||||||||||||||| ||| ||||||||||||| ||| ||||||| |||||||| | ||| |||||||| ||||||| | |
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| T |
51151095 |
tcgttacacattcaaggaccaaaataactattatttttgtttataataaaaaaataggaaagttgtatgtgtgactttagtcacacataacctctaaata |
51151194 |
T |
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| Q |
101 |
gatc |
104 |
Q |
| |
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|||| |
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| T |
51151195 |
gatc |
51151198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49724650 - 49724682
Alignment:
| Q |
1 |
tcgttacacattcaaagatcaaaataactatta |
33 |
Q |
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| T |
49724650 |
tcgttacacattcaaagatcaaagtaactatta |
49724682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4586782 - 4586750
Alignment:
| Q |
1 |
tcgttacacattcaaagatcaaaataactatta |
33 |
Q |
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| T |
4586782 |
tcgttacacattcaaggatcaaaataactatta |
4586750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 31141944 - 31141916
Alignment:
| Q |
6 |
acacattcaaagatcaaaataactattat |
34 |
Q |
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| T |
31141944 |
acacattcaaagatcaaaataactattat |
31141916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 30669666 - 30669698
Alignment:
| Q |
1 |
tcgttacacattcaaagatcaaaataactatta |
33 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
30669666 |
tcgttgcacattcaaagatcaaaataactatta |
30669698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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