View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14666_low_3 (Length: 556)

Name: NF14666_low_3
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14666_low_3
NF14666_low_3
[»] chr1 (6 HSPs)
chr1 (22-396)||(28045511-28045890)
chr1 (459-535)||(28045241-28045317)
chr1 (117-173)||(21537907-21537963)
chr1 (113-173)||(30800461-30800521)
chr1 (141-189)||(11897074-11897122)
chr1 (121-189)||(16448150-16448218)
[»] chr8 (4 HSPs)
chr8 (121-189)||(42842868-42842936)
chr8 (121-189)||(24692021-24692088)
chr8 (119-189)||(28463631-28463701)
chr8 (152-189)||(33057667-33057704)
[»] chr7 (3 HSPs)
chr7 (113-189)||(7269439-7269515)
chr7 (106-171)||(14706734-14706799)
chr7 (157-185)||(19418992-19419020)
[»] scaffold0011 (1 HSPs)
scaffold0011 (109-189)||(231333-231413)
[»] chr4 (2 HSPs)
chr4 (121-189)||(17344233-17344301)
chr4 (121-190)||(35663933-35664002)
[»] chr3 (1 HSPs)
chr3 (149-189)||(38080657-38080697)
[»] chr2 (1 HSPs)
chr2 (141-189)||(16734803-16734851)


Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 22 - 396
Target Start/End: Complemental strand, 28045890 - 28045511
Alignment:
Q  22 gaccaaaaattcaacctcatcaaatataaagtagatttaaatgtaaatttttaaaa-taagtactcacttcggtcttattattaaaaaattaggttaacg 120  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  28045890 gaccaaaaattcaacctcatcaaatataaagtagattgaaatgtaaatttttaaaaataagtactcacttcggtcttattattaaaaaattaggttaacg 28045791  T
Q  121 aaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttgatcaaactttttcttatgaggatcgagagagtaattagatagtccatt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  28045790 aaagttgatatatctgactcaaaattcagatcagatacatcaattcttgttgattaaaatttttcttatgaggatcgagagagtaattagatagtccatt 28045691  T
Q  221 tatatttttacacttcttgctattctgatgtggatgagctttgattgcatcggttttgtatgaattgc----attaagtgaagtcatctgaataagatgg 316  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||| ||||||    ||||||||||||||||||||||||||||    
T  28045690 tatatttttacacttcttcctattttgatgtggatgagctttgattgcatcagttttgtatcaattgcgttaattaagtgaagtcatctgaataagatgg 28045591  T
Q  317 taatgggacaagaccagcctcaatacaagcaatatcatataccaactcttggtactgttcttcaacttcagttggagatc 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  28045590 taatgggacaagaccagcctcaatacaagcaatatcatataccaactcttggtactgttcttcaacttcagttcgagatc 28045511  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 459 - 535
Target Start/End: Complemental strand, 28045317 - 28045241
Alignment:
Q  459 ctctcaaaaggctttatcttcaaaacatgtccacagttttggagtgttcttgttattctcttgttctgaaggttgag 535  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28045317 ctctcaaaaggctttatcttcaaaacatgtccacagttttggagtgttcttgttattctcttgttctgaaggttgag 28045241  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 21537907 - 21537963
Alignment:
Q  117 aacgaaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttga 173  Q
    ||||||||||||| ||||||| ||||| || || ||||||||||||| |||||||||    
T  21537907 aacgaaagttgatgtatctgattcaaattttagttcagatacatcaacttttgttga 21537963  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 113 - 173
Target Start/End: Complemental strand, 30800521 - 30800461
Alignment:
Q  113 ggttaacgaaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttga 173  Q
    ||||||| ||||||||| ||||||| |||||||||||   ||||||||||| |||||||||    
T  30800521 ggttaacaaaagttgatgtatctgattcaaaattcagtatagatacatcaacttttgttga 30800461  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 11897122 - 11897074
Alignment:
Q  141 aaaattcagatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    ||||||||| ||||||||||||| ||||||||| | |||||| ||||||    
T  11897122 aaaattcagttcagatacatcaacttttgttgacctaactttctcttat 11897074  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 16448150 - 16448218
Alignment:
Q  121 aaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    |||||| || ||||||  |||||||||||  |||||||||||| ||||||||| | |||||| ||||||    
T  16448150 aaagtttatgtatctggttcaaaattcagtccagatacatcaacttttgttgacccaactttctcttat 16448218  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 42842868 - 42842936
Alignment:
Q  121 aaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    |||||||||| |||||| |||||||| || ||| |||||||||||||||||||||| | ||||||||||    
T  42842868 aaagttgatacatctgattcaaaatttagttcaaatacatcaatttttgttgatcagattttttcttat 42842936  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 189
Target Start/End: Original strand, 24692021 - 24692088
Alignment:
Q  121 aaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    ||||||||||||||||  | ||||||||| ||||||||||||| ||||||||| | |||||||||||||    
T  24692021 aaagttgatatatctggtt-aaaattcagttcagatacatcaacttttgttgacctaactttttcttat 24692088  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 189
Target Start/End: Complemental strand, 28463701 - 28463631
Alignment:
Q  119 cgaaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    ||||||||||||||||||  |||||||||||  || ||||||||| ||||||||| | |||||| ||||||    
T  28463701 cgaaagttgatatatctggttcaaaattcagtccaaatacatcaacttttgttgacccaactttctcttat 28463631  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 33057667 - 33057704
Alignment:
Q  152 cagatacatcaatttttgttgatcaaactttttcttat 189  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  33057667 cagatacatcaatttttgttgaccaaactttctcttat 33057704  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 7269439 - 7269515
Alignment:
Q  113 ggttaacgaaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    ||||||| |||||||||  |||||  | ||||||||| | ||||||||||||||||||||| | |||||||||||||    
T  7269439 ggttaacaaaagttgatgcatctggttaaaaattcagtttagatacatcaatttttgttgacccaactttttcttat 7269515  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 14706799 - 14706734
Alignment:
Q  106 aaaattaggttaacgaaagttgatatatctgactcaaaattcagatcagatacatcaatttttgtt 171  Q
    |||||| ||| ||| ||||||||||||||||| | | ||||||  ||||||||||||| |||||||    
T  14706799 aaaattcggtcaacaaaagttgatatatctgattaacaattcaattcagatacatcaacttttgtt 14706734  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 19419020 - 19418992
Alignment:
Q  157 acatcaatttttgttgatcaaactttttc 185  Q
    |||||||||||||||||||||||||||||    
T  19419020 acatcaatttttgttgatcaaactttttc 19418992  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 231333 - 231413
Alignment:
Q  109 attaggttaacgaaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    ||||||| ||| |||||||||||| ||   |||||||||||  ||||||||| || ||||||||||| |||||| ||||||    
T  231333 attaggtcaacaaaagttgatatacctagttcaaaattcagtccagatacataaacttttgttgatccaactttctcttat 231413  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 17344301 - 17344233
Alignment:
Q  121 aaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    ||||||||| |||| || | ||||||||| ||||||||||||| ||||||||||  |||||| ||||||    
T  17344301 aaagttgatgtatccgattaaaaattcagttcagatacatcaacttttgttgatttaactttctcttat 17344233  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 35664002 - 35663933
Alignment:
Q  121 aaagttgatatatctgactcaaaattcagatcagatacatcaatttttgttgatcaaactttttcttatg 190  Q
    ||||||||| ||||||  ||||||||  || |||||||||||||||||||| | | |||||| |||||||    
T  35664002 aaagttgatgtatctggttcaaaatttggaccagatacatcaatttttgtttacccaactttctcttatg 35663933  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 38080657 - 38080697
Alignment:
Q  149 gatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    ||||| |||||||||||| ||||||||||| ||||||||||    
T  38080657 gatcaaatacatcaatttatgttgatcaaattttttcttat 38080697  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 16734851 - 16734803
Alignment:
Q  141 aaaattcagatcagatacatcaatttttgttgatcaaactttttcttat 189  Q
    |||||||||  |||||||||||| ||||||||| |||||||| ||||||    
T  16734851 aaaattcagtccagatacatcaacttttgttgaccaaactttctcttat 16734803  T

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