View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14666_low_5 (Length: 436)

Name: NF14666_low_5
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14666_low_5
NF14666_low_5
[»] chr1 (3 HSPs)
chr1 (178-417)||(23440087-23440328)
chr1 (1-186)||(23439752-23439945)
chr1 (5-57)||(26986092-26986144)
[»] scaffold1175 (1 HSPs)
scaffold1175 (16-60)||(2444-2488)
[»] chr7 (1 HSPs)
chr7 (16-60)||(38372998-38373042)
[»] chr8 (1 HSPs)
chr8 (3-61)||(16990721-16990779)
[»] chr3 (2 HSPs)
chr3 (16-62)||(48977521-48977567)
chr3 (24-60)||(54475816-54475852)
[»] chr2 (3 HSPs)
chr2 (16-62)||(14486958-14487004)
chr2 (24-62)||(33827599-33827637)
chr2 (16-60)||(8192370-8192414)
[»] scaffold0049 (1 HSPs)
scaffold0049 (16-60)||(66889-66933)
[»] chr5 (1 HSPs)
chr5 (16-60)||(32059458-32059502)
[»] chr4 (1 HSPs)
chr4 (24-60)||(32986332-32986368)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 178 - 417
Target Start/End: Original strand, 23440087 - 23440328
Alignment:
Q  178 catcgtaccaacccaaatgggtttataaacagtaaaaagttatttgatcgaacatgcatgaaagacttgacatgcatgaagaacctaataaaagggactt 277  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23440087 catcgtaccaacccaaatgggtttataaacagtata--gttatttgatcgaacatgcatgaaagacttgacatgcatgaagaacctaatacaagggactt 23440184  T
Q  278 aacatatatt----gaatccacccttatgctaaactacaacaaagtcagaaattgtaacagtttctaaataaacacaacatattgagctgaagaaatgca 373  Q
    ||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23440185 aacatatattcattgaatccacccttatgctaaactacaacaaagtcagaaattgtaacagtttctaaataaacacaaaatattgagctgaagaaatgca 23440284  T
Q  374 tatgaactcaacaagaagcacatgcaagcaacacacatagccct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  23440285 tatgaactcaacaagaagcacatgcaagcaacacacatagccct 23440328  T

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Target: chr1; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 23439752 - 23439945
Alignment:
Q  1 atttggtatccgggacaaggacggactattccaaggggtccaatcccaccgcccacttgcagatgacccattcaaagttggaccaaagctctatatgtac 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  23439752 atttggtatccgggacaaggacggactattccgaggggtccaatcccaccgcccacttgcagatgacccattcaaagttggaccaaagctatatatgtac 23439851  T
Q  101 ttgtccactgaaattagcatc-------tcgaa-ctgagacattgagaggaacacactccaaggtgtggagtctgaagccaacgtcatcgtacc 186  Q
    |||||||||||||||||||||       ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23439852 ttgtccactgaaattagcatcaggggattcgaacctgagacattgagaggaacacactccaaggtgtggagtctcaagccaacgtcatcgtacc 23439945  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 26986092 - 26986144
Alignment:
Q  5 ggtatccgggacaaggacggactattccaaggggtccaatcccaccgcccact 57  Q
    |||||||||  ||||||| ||||||||| |||||||||||||||||| |||||    
T  26986092 ggtatccggcccaaggaccgactattccgaggggtccaatcccaccggccact 26986144  T

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Target: scaffold1175 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1175
Description:

Target: scaffold1175; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 2444 - 2488
Alignment:
Q  16 caaggacggactattccaaggggtccaatcccaccgcccacttgc 60  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||    
T  2444 caaggacggactaatccgaggggaccaatcccaccgcccacttgc 2488  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 38372998 - 38373042
Alignment:
Q  16 caaggacggactattccaaggggtccaatcccaccgcccacttgc 60  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||||    
T  38372998 caaggaccgactaatccaaggggtccaatcccaccgtccacttgc 38373042  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 16990779 - 16990721
Alignment:
Q  3 ttggtatccgggacaaggacggactattccaaggggtccaatcccaccgcccacttgca 61  Q
    ||||||||||   ||||||| ||||| ||||||||| ||| ||||||||||||||||||    
T  16990779 ttggtatccgatccaaggaccgactaatccaaggggaccagtcccaccgcccacttgca 16990721  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 48977567 - 48977521
Alignment:
Q  16 caaggacggactattccaaggggtccaatcccaccgcccacttgcag 62  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||||||    
T  48977567 caaggaccgactaatccgaggggaccaatcccaccgcccacttgcag 48977521  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 54475852 - 54475816
Alignment:
Q  24 gactattccaaggggtccaatcccaccgcccacttgc 60  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  54475852 gactaatccaaggggaccaatcccaccgcccacttgc 54475816  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 14487004 - 14486958
Alignment:
Q  16 caaggacggactattccaaggggtccaatcccaccgcccacttgcag 62  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||||||    
T  14487004 caaggaccgactaatccgaggggaccaatcccaccgcccacttgcag 14486958  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 33827599 - 33827637
Alignment:
Q  24 gactattccaaggggtccaatcccaccgcccacttgcag 62  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  33827599 gactaatccaaggggaccaatcccaccgcccacttgcag 33827637  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 8192370 - 8192414
Alignment:
Q  16 caaggacggactattccaaggggtccaatcccaccgcccacttgc 60  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||||    
T  8192370 caaggaccgactaatccgaggggcccaatcccaccgcccacttgc 8192414  T

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Target: scaffold0049 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 66933 - 66889
Alignment:
Q  16 caaggacggactattccaaggggtccaatcccaccgcccacttgc 60  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||||    
T  66933 caaggaccgactaatccgaggggaccaatcccaccgcccacttgc 66889  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 32059458 - 32059502
Alignment:
Q  16 caaggacggactattccaaggggtccaatcccaccgcccacttgc 60  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||||    
T  32059458 caaggaccgactaatccgaggggaccaatcccaccgcccacttgc 32059502  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 32986368 - 32986332
Alignment:
Q  24 gactattccaaggggtccaatcccaccgcccacttgc 60  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  32986368 gactattccgaggggaccaatcccaccgcccacttgc 32986332  T

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