View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14666_low_6 (Length: 377)
Name: NF14666_low_6
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14666_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 50609337 - 50608967
Alignment:
| Q |
1 |
tatgtcaaatataattggtccctgt--------ctcaaactcatttagcaaatttagagcatgattgcaaagttttgtctaaatcgggtgctacgaatga |
92 |
Q |
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| T |
50609337 |
tatgtcaaatataattggtccctgtattagtgtctcaaattcatttagcaaatttagagcatgattgcaaagttttgtctaaatcgggtgctacgaaaga |
50609238 |
T |
|
| Q |
93 |
tttgaaatatgaacaacgacatgaacatcaatnnnnnnn-tttgttacaagatcatcaacaataattgatgccggatagatttgaaaaactatataaatt |
191 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50609237 |
tttgaaatatgaacaacgacatgaacatcaataaaaaaaatttgttacaagatcatcaacaataattgatgccggatagatttgaaaaactatataaatt |
50609138 |
T |
|
| Q |
192 |
gtataatactagttgatagatccttcaacattttgcagaaataaaaatgctaaaagtttttacatggatgccttccatctgcatccttgcaagggtgaag |
291 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50609137 |
gtataatactagttgatagatccttcaaccttttgcagaaataaaaatgctaaaagtttttacatggatgccttccatctgcatccttgcaagggtgaag |
50609038 |
T |
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| Q |
292 |
gctttgattcttttgttcaactccagcaacaagaaaatatgcagtgtgcctgaaaacacaaggttgctatt |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50609037 |
gctttgattcttttgttcaactccagcaacaagaaaatatgcagtgtgcctgaaaacataaggttgctatt |
50608967 |
T |
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