View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14666_low_7 (Length: 377)
Name: NF14666_low_7
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14666_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 38 - 343
Target Start/End: Original strand, 41855635 - 41855941
Alignment:
| Q |
38 |
gacaagtgttgatatcggttttttgccaaataatttctatcattcaaaattaacctgtagtgctgttatgtaaacacctaaataaaagagtatttgtgta |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41855635 |
gacaagtgttgatatcggttttttgccaaataatttctgtcattcaaaattaacctgtagtgctgttatgtaaacacctaaataaaagagtatttgtgta |
41855734 |
T |
|
| Q |
138 |
taggaaaccaaaaaaggagtaattattcaataacaatatgcgtagttggagttgaaaaatcacgtttaaaaaggtaaaatttgattgtttaacaggtaat |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41855735 |
taggaaaccaaaaaaggagtaattattcaataacaatatgcgtagttggagttgaaaaatcacgtttaaaaaggtaaaatttgattgtttaacaggtaat |
41855834 |
T |
|
| Q |
238 |
ttttaccgtaactnnnnnnnntg-atcaacggccataggtcagtcgggtctattagttgaagcataagtacccaaccactacggccaattgatacattga |
336 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41855835 |
ttttaccgtaactaaaaaaaatgaatcaacggccataggtcagtcgggtctattagttgaagcataagtacccaaccactacggccaattgatacattga |
41855934 |
T |
|
| Q |
337 |
atgttat |
343 |
Q |
| |
|
||||||| |
|
|
| T |
41855935 |
atgttat |
41855941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University