View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14666_low_8 (Length: 372)
Name: NF14666_low_8
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14666_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 76 - 267
Target Start/End: Complemental strand, 48069736 - 48069545
Alignment:
| Q |
76 |
ataagagtgttctttttacaacttgattctttttcacattttatttgttctataaatgaagaaaacaaaattgtttcaattattttataaactttaaatc |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48069736 |
ataagagtgttctttttacaacttgattctttttcacattttatctgttctataaatgaagaaaacaaaattgtttcaattattttataaactttaaatc |
48069637 |
T |
|
| Q |
176 |
aggcaagctgtttatgaatcaaccaatactacaacattttttacttatgggtttgtgctcaaaaagtcattaaggcttctcccttatgcctc |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48069636 |
aggcaagctgtttatgaatcaaccaatactacaacatttttcacttatgggtttgtgctcaaaaagtcattaaggcttctcccttatgcctc |
48069545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 48069485 - 48069421
Alignment:
| Q |
290 |
agaaactagcatatggttagaatgctgaagtatgccatgaatgcattgtaatacaatgcttttat |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48069485 |
agaaactagcatatggttagaatgctgaagtatgccatgaatgcattgtaatacaatgcttttat |
48069421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University