View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14666_low_9 (Length: 366)
Name: NF14666_low_9
Description: NF14666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14666_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 444212 - 443846
Alignment:
| Q |
1 |
caaataaacaagtcttatagggaaatcggcgaggaagaaaagtgtagggtagaaaggggcaacaagtgtgaggaacatggccctctcagccaggtcttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444212 |
caaataaacaagtcttatagggaaatcggcgaggaagaaaagtgtagggtaggaaggggcaacaagtgtgaggaacatggccctctcagccaggtcttca |
444113 |
T |
|
| Q |
101 |
gcgacagttggatcagaagcaacagttgttaggtcagaatcgatgattccgttgatggaaatgaagttcatggccgcttgttgaaatagttggagggagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444112 |
gcgacagttggatcagaagcaacagttgttaggtcagaatcgatgattccgttgacggaaatgaagttcatggccgcttgttgaaatagttggagggagg |
444013 |
T |
|
| Q |
201 |
aattgaattgagagtgaataagaagaacctccaatatgtagccttttgggtcgcgttcaactttggattggagtgtttgaaggtttagcttctccgacct |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
444012 |
aattgaattgagagtgaataaggagaacctccaatatgtagcctattgggtcgcgttcaactttggattggagtgtttgaaggtttagcttctccgacct |
443913 |
T |
|
| Q |
301 |
cccacccaaagcctccgccaccggtagtttgccg-cgcatgacatgaaattggttgagcttagtttc |
366 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
443912 |
cccacccaaagcctccgccaccattagtttgccgtcgcatgacatgaaattggttgagcttagtttc |
443846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University