View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14667_high_1 (Length: 585)
Name: NF14667_high_1
Description: NF14667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14667_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 2 - 571
Target Start/End: Original strand, 13233990 - 13234559
Alignment:
| Q |
2 |
cagccatgcctcccctggcatctacacatactcaagtgaaatccttccagcaacaccaacaccacatagcagcgactacgtagtcgacgagaatgactac |
101 |
Q |
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| T |
13233990 |
cagccatgcttcccctggcatctacacatactcaagtgaaatccttccagcaacaccaacaccacatagcagtgactacgtagtcgacgagaatgactac |
13234089 |
T |
|
| Q |
102 |
cttacaccaaccaatagctcacaagaacatctaggtccaaagtttgcaaattcctacatagcagagacatggatcctaatgcgccgcaacttcaccaaca |
201 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
13234090 |
cttacaccaacaaatagctcacaagaacatctaggtccaaagtttgcaaattcctacataggagagacatggatcctaatgcgccgcaacttcacaaaca |
13234189 |
T |
|
| Q |
202 |
tacggagaacccccgagctttttctatcaagactaatggtcctcaccttcatgggagttatgatggcaacaatgttccacaatccaaaaaataccttaca |
301 |
Q |
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| T |
13234190 |
tacggagaacccccgagctttttctatcaagactaatggtcctcaccttcatgggagttatgatggcaacaatgttccacaatccaaaaaataccttaca |
13234289 |
T |
|
| Q |
302 |
aggaatcacaaatcgtctcagtttcttcattttcacagtgtgtctgtttttcttctcttcaaatgatgcggtccctgccttcatccaagagaggttcatc |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
13234290 |
aggaatcacaaatcgtctcagtttcttcattttcacagtgtgtctgtttttcttctcttcaaatgatgccgtccctgccttcatccaagagaggttcatc |
13234389 |
T |
|
| Q |
402 |
ttcatccgcgaaacttctcataatgcctatagagcttcttgttacaccatagctagcctaatcactcacatgccgtttcttgcgctccaagctttagcct |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13234390 |
ttcatccgcgaaacttctcataatgcctatagagcttcttgttacaccatagctagcctaatcactcacatgccgtttcttgcgctccaagctttagcct |
13234489 |
T |
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| Q |
502 |
atgctgccattgtttggtttgctttagaacttagaggcccatttatatacttcttccttgttctcttcat |
571 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13234490 |
atgctgccattgtttggtttgctttagaacttagaggcccatttatatacttcttccttgttctcttcat |
13234559 |
T |
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