View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14667_high_2 (Length: 560)
Name: NF14667_high_2
Description: NF14667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14667_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 545
Target Start/End: Original strand, 45757450 - 45757966
Alignment:
| Q |
12 |
atggattagagattctgcagaagaagaaaaa--tgaattagaggctttcatgtgacttctacatatagtaaaggtgatcatgttgaatatatatacactg |
109 |
Q |
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| T |
45757450 |
atggattagagattcctcagaagaagaaaaaaatgaatgagaggctttcatgtgacttctacatatagtaaaggtgatcacgttgaatatatatacactg |
45757549 |
T |
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| Q |
110 |
agaggcatactattaaaacaaaatatttttctaattttttcatatataagcttaattaaggctaaggcctcactggattgaccctaaattgagccaacca |
209 |
Q |
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| T |
45757550 |
agaggcatactattaaaacaaaatatttgtctaattttttcatatataggcttaattaaggctaaggcctcactggattgaccctaa------------- |
45757636 |
T |
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| Q |
210 |
tgcttaaattaattcatgcaaaagattnnnnnnnnn-tgttcatatcatatgttattgtcatgatgagcactaaaatatattgaagataaatccaaatat |
308 |
Q |
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| T |
45757637 |
-------attaattcatgcaaaagattaaaaaaaaaatgttcatatcatatgttattgtgatgatgagcactaaaatatattgaagataaatccaaatat |
45757729 |
T |
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| Q |
309 |
atactgccaagatgaatatacaagaggcaaatatcatggtatatctgttggcaggatatgaagcatttccaaacatcaacataatgatcagattcaacaa |
408 |
Q |
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| T |
45757730 |
atactgccaagatgaatatacaagaggcaaatatcatggtatatctgttggcaggatatgaagcatttccaaacatcaacataatgatcagattcaacaa |
45757829 |
T |
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| Q |
409 |
actcttgtaaatcatgaaactctgattcaattccaataatgtatagtagttgaagtttgattattagtggcagaatagaaagggaagtaaagtaataatg |
508 |
Q |
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| T |
45757830 |
actcttgtaaatcatgaaactctgattcaattccaataatgtatagtagttgaagtttgattattagtggcagaatagaaagggaagtaaagtaataatg |
45757929 |
T |
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| Q |
509 |
gttgcagttgcacaaattcagacgtaaaggttgaata |
545 |
Q |
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| T |
45757930 |
gttgcagttgcacaaattcagacgtaaaggttgaata |
45757966 |
T |
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