View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14667_high_4 (Length: 453)
Name: NF14667_high_4
Description: NF14667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14667_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 30001382 - 30000968
Alignment:
| Q |
19 |
aacacatctgaaattctccacaaacttctaaaagactcatatttctttaagaataacataacaatcaaacttgaaacttatatcttccaagttccaatat |
118 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
30001382 |
aacacatctgaaattctccgcaaacttctaaaagactcatatttctttaagaataacataacaatcaaacttgaaact-atatcttccaagttccaatat |
30001284 |
T |
|
| Q |
119 |
cctcaacctaaagtcaatgtgcttaaaatgaacaaagtaactcacccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagacccc |
218 |
Q |
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| T |
30001283 |
cctcaacctaaagtcaatgtgcttaaaatgaacaaagtaactcacccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagacccc |
30001184 |
T |
|
| Q |
219 |
aaactaatctgcttcacagcttcaatctgcacagcttcaggatcctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30001183 |
aaactaatctgcttcacagcttcaatctgcacagcttcaggatcctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcat |
30001084 |
T |
|
| Q |
319 |
gatcccttgaaccaattgcacaacaacctgtatcacgcctatccgaatccgaaacaacatccaaaccaacatttctcacaatatcagatgattccacttc |
418 |
Q |
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|||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30001083 |
gatcccttgaaccaattgcacaacaacccgtatcatgtctatccgaatccgaaacaacatccaaaccaacatttctcacaatatcagatgattccacttc |
30000984 |
T |
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| Q |
419 |
catcctctcaactttt |
434 |
Q |
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| T |
30000983 |
catcctctcaactttt |
30000968 |
T |
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Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 330
Target Start/End: Complemental strand, 45199361 - 45199193
Alignment:
| Q |
162 |
acccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagaccccaaactaatctgcttcacagcttcaatctgcacagcttcaggat |
261 |
Q |
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|||||||||| |||||| |||| ||||||||||||||||||||| | |||||| |||||||| || ||||| |||||||||||||| ||||| || |||| |
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| T |
45199361 |
acccagtatcggtatgcgacaacttcagctggtgtattatcagggtgacaagatcccaaactgatttgcttaacagcttcaatctgtacagcctcgggat |
45199262 |
T |
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| Q |
262 |
cctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcatgatcccttgaac |
330 |
Q |
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||||||||||||||| ||| ||||| | | | |||||| ||||| ||||||||| |||||||||||| |
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| T |
45199261 |
cctcctttgcactcagctctaaagcaagctgaatttgatattcttcttccacttcaggatcccttgaac |
45199193 |
T |
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