View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14667_low_10 (Length: 255)
Name: NF14667_low_10
Description: NF14667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14667_low_10 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 10436 - 10675
Alignment:
| Q |
1 |
tctgatattaatttcatacaaattcaaaccatattaggaacctctcttgcaactttttctgattagtatgcttgtgttgaattcatctgaaaaccatgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10436 |
tctgatattaatttcatacaaattcaaaccatattaggaacctctcttgcaactttttctgattagtatgcttgtgttgaattcatctgaaaaccatgtc |
10535 |
T |
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| Q |
101 |
agacaactctcccatgaaccaagaatttaaagtttaagctaaagtttttcttatcttgtgttgccatcatactacttaaacattcacatctttttacagc |
200 |
Q |
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| T |
10536 |
agacaactctcccatgaaccaagaatttaaagtttaagctaaagtttttcttatcttgtgttgccatcatactacttaaacattcacatctttttacagc |
10635 |
T |
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| Q |
201 |
attcaaccataacatacatcacattcattttaaacctttg |
240 |
Q |
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| T |
10636 |
attcaaccataacatacatcacattcattttaaacctttg |
10675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24115236 - 24115474
Alignment:
| Q |
1 |
tctgatattaatttcatacaaattcaaaccatattaggaacctctcttgcaactttttctgattagtatgcttgtgttgaattcatctgaaaaccatgtc |
100 |
Q |
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|||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||| |||| |||||| ||||||||||||||||||||| |
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| T |
24115236 |
tctggtattaatttcatacaacttcaaaccatattagga-cctctcttgcaactttct-tgattagcatgcctgtgttcaattcatctgaaaaccatgtc |
24115333 |
T |
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| Q |
101 |
agacaactctcccatgaaccaagaatttaaagtttaagctaaagtttttcttatcttgtgttgccatcat-actacttaaacattcacatctttttacag |
199 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
24115334 |
agacaactctcccatcaaccaagaatttaaagtttaagctaaagattttcttatcttgtgttgccatcatcactacttaaccattcacatctttttacag |
24115433 |
T |
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| Q |
200 |
cattcaaccataacatacatcacattcattttaaacctttg |
240 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||| |
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| T |
24115434 |
cattcaaccacaacatacagcacattcattttaaacctttg |
24115474 |
T |
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