View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14667_low_9 (Length: 259)
Name: NF14667_low_9
Description: NF14667
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14667_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 6133734 - 6133966
Alignment:
| Q |
18 |
gtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttattgatgacatgt |
117 |
Q |
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| T |
6133734 |
gtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttatagatgacatgt |
6133833 |
T |
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| Q |
118 |
cttcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattt |
217 |
Q |
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| T |
6133834 |
cttcttcttcaatgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattt |
6133933 |
T |
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| Q |
218 |
tgtgaatgtttatggttcattgtatgatgatgt |
250 |
Q |
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| T |
6133934 |
tgtgaacgtttatggttcattgtatgatgatgt |
6133966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 250
Target Start/End: Original strand, 20599914 - 20600146
Alignment:
| Q |
18 |
gtatttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttattgatgacatgt |
117 |
Q |
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| T |
20599914 |
gtatttgctgttcatgcttttattcttgaatcagggtttgttcgtgtggatcacgtttcaggtatggctatcagtatctctcatcttattgatgacatgt |
20600013 |
T |
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| Q |
118 |
cttcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattt |
217 |
Q |
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| T |
20600014 |
cttcttcttcaatgatatccttgaggtatactcttcctgagattcttactaatggttcatctcattctttgaatttgaaaattcagacattagggcattt |
20600113 |
T |
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| Q |
218 |
tgtgaatgtttatggttcattgtatgatgatgt |
250 |
Q |
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| T |
20600114 |
tgtgaatgtttatggttcattgtatgatgatgt |
20600146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 120 - 249
Target Start/End: Complemental strand, 47944862 - 47944733
Alignment:
| Q |
120 |
tcttcttcagtgatatgtttgaggtatactcttcctgagattcttactaatggttcacctcattcattgaatttgaaaattcagacattagggcattttg |
219 |
Q |
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||||| ||| |||||| |||||||||||||||||||||||||||||| ||||||||| ||||| | ||| |||||||||||||| |||||| |||||| |
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| T |
47944862 |
tcttcatcaatgatatctttgaggtatactcttcctgagattcttaccaatggttcatctcatgctgtgatattgaaaattcagactttagggaattttg |
47944763 |
T |
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| Q |
220 |
tgaatgtttatggttcattgtatgatgatg |
249 |
Q |
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||||||| ||||||||||||| |||||||| |
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| T |
47944762 |
tgaatgtctatggttcattgtgtgatgatg |
47944733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 127
Target Start/End: Complemental strand, 47944994 - 47944888
Alignment:
| Q |
21 |
tttgcagttcatgcttttattcttgaatcagggtttattcgtgtggatcgcgtttcgggtgtgaagattagttcctctcatcttattgatgacatgtctt |
120 |
Q |
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||||| ||||||||| ||||||||||||| |||||| |||||||||| ||||||||| || |||||||| |||| ||||| ||||||| ||||||| |
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| T |
47944994 |
tttgcggttcatgctgttattcttgaatctgggtttgttcgtgtggacgaggtttcgggtatggcgattagttgctctaatcttgttgatgatatgtctt |
47944895 |
T |
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| Q |
121 |
cttcttc |
127 |
Q |
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||||||| |
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| T |
47944894 |
cttcttc |
47944888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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