View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14668_high_5 (Length: 439)
Name: NF14668_high_5
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 16 - 439
Target Start/End: Complemental strand, 22342548 - 22342125
Alignment:
| Q |
16 |
gtaagatcttcttacatgttatagtttttagttacaaaagcaaaaggtttggtttctaggagattatgcaatttttagtagtagcttgcattacaagttt |
115 |
Q |
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| T |
22342548 |
gtaagatcttcttacatgttatagtttttagttacaaaagcaaaaggtttggtttctaggagattatgcaatttttagtagtagcttgcattacaagttt |
22342449 |
T |
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| Q |
116 |
catctttggatgaaaggaactaggtggtatgttattatttttatctactatagatttcattagatattttaggatattttggcaatttgtgcctatggac |
215 |
Q |
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| T |
22342448 |
catctttggatgaaaggaactaggtggtatgttattatttctatctactatagatttcattagatattttaggatattttggcaatttgtgcctatggac |
22342349 |
T |
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| Q |
216 |
tatggagtgaaaggggtaaccaattactctttgattttttcagtaagataacaataatctatacttagatagttatgtatgttttttattatttaaatgt |
315 |
Q |
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| T |
22342348 |
tatggagtgaaaggggtaaccaattactctttgattttttcagtaagataacaataatctatacttagatagttatgtatgttttttattatttaaatgt |
22342249 |
T |
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| Q |
316 |
tttttgattgttaattgtatgtcactatctttataagatgctaggggttattatgcagaataaataagaaaactatcttgtattggaatgtcatattgat |
415 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
22342248 |
tttttgatggttaattctatgtcactatctttataagatgctaggggttattatgcagaataaataagaaaaatatcttgtattggaatgtcttattgat |
22342149 |
T |
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| Q |
416 |
atctgaaaaggcagaaccgttttc |
439 |
Q |
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| T |
22342148 |
atctgaaaaggcagaaccgttttc |
22342125 |
T |
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