View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14668_high_9 (Length: 338)
Name: NF14668_high_9
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 36833526 - 36833218
Alignment:
| Q |
15 |
cataggtaaatatttaatttctacttctttttgttgcaaaagtcatacagaaacatgtccttggtatttgagtgttttgtggattaactaaaaaattggc |
114 |
Q |
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| T |
36833526 |
cataggtaaatatttaatttctacttctttttgttgcaaaagtcatacagaaacatgtccttggtatttgagtgttctgtggattaactaaaaaattggc |
36833427 |
T |
|
| Q |
115 |
accctagtagtgatttgaatatcatcttttctgtaattttttcttgtaaaattattgataatgagttcataattatgttttaaatcgttggaagagtgtc |
214 |
Q |
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| T |
36833426 |
accctagtagtgatttgaatatcatattttctgtaattttttcttgtaaaattattgataatgagttcataattatgttttaaatcgttggaagagtgtc |
36833327 |
T |
|
| Q |
215 |
ccaccaagtaaagtcatgacagtcgtgtctcaggatagtaagtttgtcataacaaatgttaccttctctgaagacatgggagaagaggaggcgtaaagga |
314 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| || || |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36833326 |
ccaccaagtaaagtcatgacagtcgtgtcccaggatagtaagtttgtcggaataagtgttaccttctctgaagacatgggagaagaggagacgtaaagga |
36833227 |
T |
|
| Q |
315 |
gaggcaaag |
323 |
Q |
| |
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||||||||| |
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| T |
36833226 |
gaggcaaag |
36833218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 42068840 - 42068784
Alignment:
| Q |
266 |
acaaatgttaccttctctgaagacatgggagaagaggaggcgtaaaggagaggcaaa |
322 |
Q |
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| T |
42068840 |
acaagtgttaccttctctgaagacatgggagaataggaggcgtaaaggagaggcaaa |
42068784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Original strand, 49329991 - 49330044
Alignment:
| Q |
271 |
tgttaccttctctgaagacatgggagaagaggaggcgtaaaggagaggcaaagt |
324 |
Q |
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|||||||||| || ||||||| ||||||||||| |||||||||||||||||||| |
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| T |
49329991 |
tgttaccttcgctaaagacataggagaagaggatgcgtaaaggagaggcaaagt |
49330044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 205 - 306
Target Start/End: Original strand, 9981940 - 9982041
Alignment:
| Q |
205 |
gaagagtgtcccaccaagtaaagtcatgacagtcgtgtctcaggatagtaagtttgtcataacaaatgttaccttctctgaagacatgggagaagaggag |
304 |
Q |
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|||| |||||| ||||||||||||| |||| | || |||||| |||||||||||| |||| ||||||||||||| || ||||||||||||||||| |
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| T |
9981940 |
gaagtgtgtcctaccaagtaaagtccagacaaccatgactcagggcagtaagtttgtcggcacaagtgttaccttctctaaaaacatgggagaagaggag |
9982039 |
T |
|
| Q |
305 |
gc |
306 |
Q |
| |
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|| |
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|
| T |
9982040 |
gc |
9982041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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