View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14668_low_1 (Length: 651)
Name: NF14668_low_1
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 587; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 16 - 634
Target Start/End: Complemental strand, 48461209 - 48460589
Alignment:
| Q |
16 |
tattctaaaatagcaacagaccatgttatctatctcctttccaacttttcatcaacattattggatacaatcagggtaccgttcttccccacaaaacatc |
115 |
Q |
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| T |
48461209 |
tattctaaaatagcaacagaccatgttatctatctcctttccaacttttcatcaacattattggatacaatcagggtaccgttcttccccacaaaacatc |
48461110 |
T |
|
| Q |
116 |
atatcaaaaagcaatgaaaagccaatctagcctaaccttactttatgtgtacatatatgcccaaagctcacaagtcagatcctactttcactatcaagtg |
215 |
Q |
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| T |
48461109 |
atatcaaaaagcaatgaaaagccaatctagcctaaccttactttatgtgtacatatatgcccaaagctcacaagtcagatcctactttcactatcaagtg |
48461010 |
T |
|
| Q |
216 |
gagtataaaaggttaaaaatgaactaattaattcagattccaataaccaaagtggataaacatgaagactccatcatattatcctactcaaaaagtatag |
315 |
Q |
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| T |
48461009 |
gagtataaaaggttaaaaat--actaattaattcagattccaataaccaaagtggataaacatgaagactccatcatattatcctactcaaaaagtatag |
48460912 |
T |
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| Q |
316 |
caggtatagatttgtgaaatgaggtaagaagcatgtattggcaggcagttcaaataagttgtgattcgattttgacagtggatgaaaagatttagt---- |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48460911 |
caggtatagatttgtgaaatgaggtaagaagcatgtattggcaggcagttcaaataagttgtgattcgattttgacagtggatgaaatgatttagttaga |
48460812 |
T |
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| Q |
412 |
attgtcaactatatattttgatggctattccaaagttggccaagaaaggttagaactttgtaaggagaaaagaggaaaacgggtaaaagattatagtggg |
511 |
Q |
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| T |
48460811 |
attgtcaactatatattttgatggctattccaaagttggccaagaaaggttaggactttgtaaggagaaaagaggaaaacgggtaaaagattatagtggg |
48460712 |
T |
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| Q |
512 |
gaatcataagcttgaaagggggctaacagtgaagatgacctgagcattgttccctacagaaccaagcatcactaggtggggttactaattgggatgacat |
611 |
Q |
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| T |
48460711 |
gaatcataagcttgaaagggggctaacagtgaagatgacctgagcattgttccctacagaaccaagcatcactaggtggggttactaattgggatgacat |
48460612 |
T |
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| Q |
612 |
aaaataaacatcctatctaactt |
634 |
Q |
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| T |
48460611 |
aaaataaacatcctatctaactt |
48460589 |
T |
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