View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14668_low_10 (Length: 370)
Name: NF14668_low_10
Description: NF14668
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14668_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 354
Target Start/End: Complemental strand, 1030802 - 1030462
Alignment:
| Q |
9 |
gaagaatatcacacagattctaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggcaactacatgtattaataatc |
108 |
Q |
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| T |
1030802 |
gaagaaaatcacacagattccaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggcaactacatgtattaataatc |
1030703 |
T |
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| Q |
109 |
taaataatttccaataaatattgcctaacatttcgctatcaaatgtccaattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtatt |
208 |
Q |
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| T |
1030702 |
taaataatttccaataaatattgcctaacatttcgctatcatatgtccaatttta---gaaccacaa--tttgcaccaatttgatccatgcaaccgtatt |
1030608 |
T |
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| Q |
209 |
agactttagaaaaaactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagttgcaccgtaaaacagctatagaggaccc |
308 |
Q |
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| T |
1030607 |
agactttagaaaaaactgtatgattggacctccttgacgaacccggaccctctacaaccgtctgcagacagttgccccgtaaaatggctatagaggaccc |
1030508 |
T |
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| Q |
309 |
aaacttgctatctgacccaaaataaaactctcaagaccatgcttca |
354 |
Q |
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| T |
1030507 |
aaacttgctatctgacccaaaataaaactctcaagaccatgcttca |
1030462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 242
Target Start/End: Complemental strand, 40833351 - 40833124
Alignment:
| Q |
23 |
agattctaacattcttcataaaccaaggaaccaagtatttacaatgtataaatagaataataaggc-----------aactacatgtattaataatctaa |
111 |
Q |
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| T |
40833351 |
agattccaacattcttcgtagaccaaggaagcaagtatttacaatgtataaatagaataataaagctcactttcttaaaccacatgaaataacaatctaa |
40833252 |
T |
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| Q |
112 |
ataatttccaataaatattgcctaacatttcgctatcaaatgtccaattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattaga |
211 |
Q |
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| T |
40833251 |
ataatttccaataaataccggctaacatacccctatcaaatgtccaattttg---gaaccacaaaatttgcaccaatttgatacattccatcatactaga |
40833155 |
T |
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| Q |
212 |
ctttagaaaaaactgtatgattggacctcct |
242 |
Q |
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| T |
40833154 |
ctttaaaaaaaactgtattattggacctcct |
40833124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 157 - 354
Target Start/End: Complemental strand, 46554249 - 46554052
Alignment:
| Q |
157 |
aattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggac |
256 |
Q |
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| T |
46554249 |
aattttattagaaccacaaaatttgcaccaatttgatccatgcaaccgtattagactttagaaaaaactgtatgattggacctccttgacgaacccggac |
46554150 |
T |
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| Q |
257 |
cctctacaaccgtctgcagacagttgcaccgtaaaacagctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttca |
354 |
Q |
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| T |
46554149 |
cctctacaaccgtctgcagacagttgctccgtaaaatggctatagaggacccaaacttgctatctgacccaaaataaaactctcaagaccatgcttca |
46554052 |
T |
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